Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00080 ATGAGGGAAATAGAGGAGAGGATGGAGAGAGGGATGTGTGAGCCATTGCTTGTGAGGAGGATCAACAACACTTCCCAGCTCGCCATTGTTGGAGCCGATATCTCTCCCATTCAGAGTCTTGATTACGAGATAATTGAGAATGATCCTTTTAAGCAGGACTGGAGGTCCAGAACAAAGATTGAGATATACCAGTATATTGTCCTCAAGTGGACCCTTGCACTTCTTATTGGTTTATTTACAGGGCTTGTTGGCTTCTTTAATAACCTTGGAGTTGAGAATATTGTTGGTTTCAAGCTTTTACTCACCAACAATCTCATGCGCAGGCAAAAGTATCATCAGGCTTTTGCAGTGTACGTTGGTTGTAACATGATTTTAGGCATTGCAGCTGCAGCCCTGTGTGCATACATAGCCCCAGCAGCAGCAGGGTCTGGCATACCTGAGGTGAAGGCATACCTCAATGGTATAGATGCACACTCTATATTGGCTCCGAGTACCCTCTTTGTAAAGATATTTGGTTCAATTTTTGGGGTTGCCGCGGGTTTTGTCGTGGGTAAAGAAGGACCTATGGTACATACTGGTGCTTGCATAGCTAATTTACTTGGACAAGGCGGTTCTCGAAAATATGGGCTGACATGTAAATGGCTCAGATACTTTAAAAATGACAGAGATCGAAGGGATTTGATCACATGCGGTGCAGCTGCTGGTGTTGCCGGTGCCTTCCGTGCCCCTGTTGGTGGTGTCCTTTTCGCACTTGAAGAAGTAGCTTCATGGTGGAGGAGTGCTCTTCTGTGGCGCACTTTCTTTACAACGGCTGTAGTAGCTGTAGTGCTGAGAGCTCTTATACAATATTGTCAGGGAGGAAAATGTGGTCTTTTTGGGAAAGGAGGTCTGATAATGTTTGATGTTAATTCAGCAAAGCGTGTGTACAGCACAAATGACCTCCTGATAATCGTATTTCTTGGAGTTATAGGCGGGCTTATGGGAAGCCTTTACAATTATCTTGTGGATAAGGTCCTTCGCGCTCACAGTATTATAAATGAGCGAGGCCCAATATTCAAAATTCTACTTGTGATCATCATCTCCCTTCTAACCTCTTGTATTCGATTTGGCCTTCCATTGCTATCAAAGTGCGTCCCTTGTCCGGGGGATCAGTGTCCAAGCTCAACCGTAGGATTGTCAATACACTACAAGAATTTTCAATGTCCACCTAACCACTACAATGACCTTAACCATCTCTTTTTTACTACTAACGATGATGCTATCCGTAACCTATTCATTGCTGGCTCTTCTGACAACATATTTCAGCTTTCTAATCTTTTAATTTTCTTCGTGGCCATATACTTGCTTGGAATCATCACTTATGGTGTTGCCATTCCCTCTGGACTCTTTATTCCTGTCATACTAGCTGGAGCTTCCTATGGGCGTCTTGTAGGGAGCGTCTTAAGTTCATTCACTGTTCTTGATACGGGTTTGTTTGCCCTCCTTGGAGCTGCATCCTTTCTTGGTGGCACCATGAGAATGACTGTTTCCCTTTGCATCATACTTCTTGAGCTCACCAATGACCTGCTGATGCTCCCGTTGGTGATGCTAGTTCTCCTTATTTCAAAGTCTGTGGCTGATTGTTTTAACAAAGGTGTTTATGATCAGATTGTGGCAATTAAGGGGCTACCTTATATGGAGGCACATGCAGAGCCATACATGAGGCATTTAGTTGCCAGTGATGTTGTTTCTGGTCCCTTGTTTACATTTGCTGGGGTGGAAAAAGTGGGGAATATTGTGCATGCTTTAAAGATCACGCGACATCATGGCTTTCCTGTAATTGATGAGCCTCCTTTCTCGGATGCTCCTGAGTTGTGTGGGTTGGTTTTGAGGTCTCATCTGCTTGTACTTCTTAAGCACAGGACATTCACGAGGCAGAGGGTGATGACTGGGTCTACCATCATGAGGACGTTTAATGCACATGATTTTGCAAAGCCAGGTTTAGGCAAAGGGCTAAAACTTGAGGATTTAGACATTTCAGAAGACGAGATGGAAATGTTTGTTGATCTCCATCCAATTACTAATACTTCACCATATACAGTAGTGGAAACAATGTCTCTTGCAAAAGCTGCTGTTCTTTTCCGTGAGCTTGGCCTCAGGCACTTGCTGGTGGTGCCTAAGACACCCGGAAGGCCTCCGATTGTTGGTATCCTTACAAGGCATGATTTCATGCCTGAGCATGTCTTGGGACTATTCCCTCGGTTGAAGGCGCACAAGTAG 2259 0.4449 MREIEERMERGMCEPLLVRRINNTSQLAIVGADISPIQSLDYEIIENDPFKQDWRSRTKIEIYQYIVLKWTLALLIGLFTGLVGFFNNLGVENIVGFKLLLTNNLMRRQKYHQAFAVYVGCNMILGIAAAALCAYIAPAAAGSGIPEVKAYLNGIDAHSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSRKYGLTCKWLRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEVASWWRSALLWRTFFTTAVVAVVLRALIQYCQGGKCGLFGKGGLIMFDVNSAKRVYSTNDLLIIVFLGVIGGLMGSLYNYLVDKVLRAHSIINERGPIFKILLVIIISLLTSCIRFGLPLLSKCVPCPGDQCPSSTVGLSIHYKNFQCPPNHYNDLNHLFFTTNDDAIRNLFIAGSSDNIFQLSNLLIFFVAIYLLGIITYGVAIPSGLFIPVILAGASYGRLVGSVLSSFTVLDTGLFALLGAASFLGGTMRMTVSLCIILLELTNDLLMLPLVMLVLLISKSVADCFNKGVYDQIVAIKGLPYMEAHAEPYMRHLVASDVVSGPLFTFAGVEKVGNIVHALKITRHHGFPVIDEPPFSDAPELCGLVLRSHLLVLLKHRTFTRQRVMTGSTIMRTFNAHDFAKPGLGKGLKLEDLDISEDEMEMFVDLHPITNTSPYTVVETMSLAKAAVLFRELGLRHLLVVPKTPGRPPIVGILTRHDFMPEHVLGLFPRLKAHK* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00080 752 PRINTS Chloride channel signature 546 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops11g00080 752 PRINTS Chloride channel signature 490 506 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops11g00080 752 PRINTS Chloride channel signature 233 252 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops11g00080 752 PRINTS Chloride channel signature 458 478 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops11g00080 752 PRINTS Chloride channel signature 138 155 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops11g00080 752 PRINTS Chloride channel signature 508 527 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops11g00080 752 PRINTS Chloride channel signature 169 188 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops11g00080 752 Gene3D Clc chloride channel 61 559 - -
Rops11g00080 752 Gene3D - 560 742 IPR046342 -
Rops11g00080 752 ProSiteProfiles CBS domain profile. 686 747 IPR000644 -
Rops11g00080 752 FunFam Chloride channel ClC3 61 377 - -
Rops11g00080 752 Pfam CBS domain 688 736 IPR000644 -
Rops11g00080 752 SUPERFAMILY CBS-domain pair 563 737 IPR046342 -
Rops11g00080 752 SUPERFAMILY Clc chloride channel 47 561 IPR014743 -
Rops11g00080 752 CDD ClC_6_like 38 559 - -
Rops11g00080 752 Pfam Voltage gated chloride channel 126 540 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Rops11g00080 752 SMART cbs_1 690 741 IPR000644 -
Rops11g00080 752 SMART cbs_1 579 632 IPR000644 -
Rops11g00080 752 CDD CBS_pair_voltage-gated_CLC_euk_bac 572 739 - -
Rops11g00080 752 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 19 742 - -
Rops11g00080 752 PRINTS Plant CLC chloride channel signature 268 278 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops11g00080 752 PRINTS Plant CLC chloride channel signature 254 262 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops11g00080 752 PRINTS Plant CLC chloride channel signature 286 293 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops11g00080 752 PRINTS Plant CLC chloride channel signature 43 51 IPR002251 GO:0005247|GO:0006821|GO:0016020
Rops11g00080 752 PRINTS Plant CLC chloride channel signature 409 425 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00080 Rops-Chr11 1352755 1360104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00080 11 752 Ion Channels AT5G49890 77.108 0.0 1121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00080 K05016 - cave:132178584 1140.95