Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00077 ATGGAAGAGAAGAATCCAGGGGGAGGGGGAGGGAGTCGAAAGGAGAAGAGGAAGGCGATGAAGAAGATGAAGAGGAAGCAGATGAGGAAGGAGATGGCGGAGAAGGAGAGGGCGCGGCTCAACGATCCGGAGGAGCAGAGGAGGATCGAGTTGATGGAGCAGCAAGAGGCTGAGAGGATGCAAAGGGACAGGATCGCCTTCGAGGAGAGTGAGAGGGCTTTCATGGACAAAATCATTATGATGCAGCAGCAGCAACAACAAAACCTACTTCTTCAACAATCTCAATCCCAATCTAACCACACTGAAAATGATGATGATGATGAATATGAAGAAGAAGAAGGGCCTCCAGAGATTATTTGGCGAGGAAATGAGATCATCCTCAAAAAGAAAAAGGTCAGAGTTAGGTTTAAGGCGGCCGAGGAGGAAATCAATCCAATTCATGACCAGGAGCAGCATCAGCATCATGCCAGTGATAATAGTGATAGACCAACATCAAATCCCTTACCGCCGGAATCTCTGTCTCTCGCTCCCACCGATTCAGCCACTCAACACATGCTCGACAATGTTGCTCCTAATTTCGGAACTGAACAGGATAAAGCTCATTGTCCTTTTCATCTCAAAACCGGAGCATGTCGCTTTGGTCAACGTTGCAGCAGAGTCCATTTTTACCCTGACAAGTCATGCACCCTTCTCATGAAAAACATGTATAATGGTCCTGGCCTTGCTTGGGAGCAAGATGAGGGCCTTGAGGTCTGTTCATTACATTCATGGCAAGATACATTTTGGTGGAGGCTCTTGATTTTGGCCTTGGGTTTGAGATTGCAGCAGCATAACCTAAAAAATGTGGATGCATATACAGATGAGGAGGTTGAATGCTGTTTTGAAGAATTTTATGATGATGTTCACACAGAGTTCCTGAAGTTTGGAGAAATTGTGAACTTCAAGGTCTGTAAAAATGGTTCATTTCACCTGCGAGGAAATGTCTACGTACAGTATAAATTTTTGGATTCTGCTCTGCTTGCTTATAACTCAATTAATGGTCGCTACTTTGCTGGGAAACAGGTAAGTTGTCAATTTGTTAATTTGACAAGATGGAAGGTTGCCATATGTAGCGAGTATATGAAATCAGGTTTCAAGACTTGTTCCCATGGAACGGCTTGCAATTTTATCCACTGTTTCCGTAATCCTGGTGGAGACTATGAATGGGCTGATTCTGACAAACCACCCCCAAAATATTGGGTGAAAAAAATGGCTGCCTTATTTGGTTATTCTGATGATTACGAGACCTTAAGGGAGCAAGAAAATTTGAGTGTGCAGAAGAACTCCAGCAACATGTCAAAAACAGATTCTGACAGGTATCACTCAAGAAGGTCAAGATCTAGGGAGATGGATCAATTGAATAGTGGTCGTTCTGGTAGAAGAAAACACAATGGGGAAAGAAAGCAAAGAACTCCTAATGAGGAACGGGATACCGACTTTAAAGACAATCATAAAAGGAAATGCAGAGGCAGAACTCCTGATACTGATTCTGATAGGGAATGGATAGAGGAAGAGGAAGATGGGGAAAATCAGTACAAACACACTAGGAGAAGCTCATTTAATAGGAACAGCAGGAGCCGTGAAGAGGATTCTGATGTGGAATGGGCTACTATAACTAGGGACAATGAAAAGCAACATGGCAGAGAAGGAAGAAACTCACGAAAGTGGAACAGGGATGGCAGGGACCGAATTTATGAGGCTGAATCAGATGGGGATAGAGATAGAAAAAGGCACCATATTAACCAAAGGAAAAGCTCAAGACATCAGAGCAGGGACAACAGTAATGTAACTGGTGAATCTGAATCTCACAAAGATGGAGGAGAGATGGAAACACAATATGATTACTCGAGGAAAAGCTTGAGACACAGAAGATCTGGTCTTCATGATGACTGTAAAGACTATGAGAATGAAGATGACAAAGTTGACGGAGGTTGGTCTCAGAGGGAGAGTGACAGACGAGCACATCATCACAAAAAGAAGAGATTAAAACACCAGAAGAAATTGGATTCCATCAATGGAGACACTAAAAATGTAAGTCAGGACAGTGGTGGAGAGTGGTTTGGTAAGGACTCAAGCGAGAATAGACATTATCATACAAGCAAAGGAGATAATCACTTATAA 2160 0.431 MEEKNPGGGGGSRKEKRKAMKKMKRKQMRKEMAEKERARLNDPEEQRRIELMEQQEAERMQRDRIAFEESERAFMDKIIMMQQQQQQNLLLQQSQSQSNHTENDDDDEYEEEEGPPEIIWRGNEIILKKKKVRVRFKAAEEEINPIHDQEQHQHHASDNSDRPTSNPLPPESLSLAPTDSATQHMLDNVAPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPDKSCTLLMKNMYNGPGLAWEQDEGLEVCSLHSWQDTFWWRLLILALGLRLQQHNLKNVDAYTDEEVECCFEEFYDDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKFLDSALLAYNSINGRYFAGKQVSCQFVNLTRWKVAICSEYMKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKYWVKKMAALFGYSDDYETLREQENLSVQKNSSNMSKTDSDRYHSRRSRSREMDQLNSGRSGRRKHNGERKQRTPNEERDTDFKDNHKRKCRGRTPDTDSDREWIEEEEDGENQYKHTRRSSFNRNSRSREEDSDVEWATITRDNEKQHGREGRNSRKWNRDGRDRIYEAESDGDRDRKRHHINQRKSSRHQSRDNSNVTGESESHKDGGEMETQYDYSRKSLRHRRSGLHDDCKDYENEDDKVDGGWSQRESDRRAHHHKKKRLKHQKKLDSINGDTKNVSQDSGGEWFGKDSSENRHYHTSKGDNHL* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00077 719 MobiDBLite consensus disorder prediction 447 473 - -
Rops11g00077 719 SUPERFAMILY RNA-binding domain, RBD 294 362 IPR035979 GO:0003676
Rops11g00077 719 MobiDBLite consensus disorder prediction 27 47 - -
Rops11g00077 719 ProSiteProfiles Zinc finger C3H1-type profile. 364 394 IPR000571 GO:0046872
Rops11g00077 719 MobiDBLite consensus disorder prediction 701 719 - -
Rops11g00077 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 362 IPR000504 GO:0003723
Rops11g00077 719 Coils Coil 630 650 - -
Rops11g00077 719 MobiDBLite consensus disorder prediction 519 590 - -
Rops11g00077 719 SMART rrm2_1 287 358 IPR003954 GO:0003676
Rops11g00077 719 Gene3D - 227 360 IPR012677 -
Rops11g00077 719 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 190 588 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops11g00077 719 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 201 221 IPR000571 GO:0046872
Rops11g00077 719 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 365 392 IPR000571 GO:0046872
Rops11g00077 719 ProSiteProfiles Zinc finger C3H1-type profile. 196 224 IPR000571 GO:0046872
Rops11g00077 719 MobiDBLite consensus disorder prediction 665 679 - -
Rops11g00077 719 MobiDBLite consensus disorder prediction 1 47 - -
Rops11g00077 719 Coils Coil 16 38 - -
Rops11g00077 719 MobiDBLite consensus disorder prediction 480 511 - -
Rops11g00077 719 MobiDBLite consensus disorder prediction 85 99 - -
Rops11g00077 719 MobiDBLite consensus disorder prediction 142 159 - -
Rops11g00077 719 SMART c3hfinal6 364 393 IPR000571 GO:0046872
Rops11g00077 719 SMART c3hfinal6 197 223 IPR000571 GO:0046872
Rops11g00077 719 MobiDBLite consensus disorder prediction 434 719 - -
Rops11g00077 719 PRINTS U2 auxiliary factor small subunit signature 319 341 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops11g00077 719 PRINTS U2 auxiliary factor small subunit signature 384 396 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops11g00077 719 PRINTS U2 auxiliary factor small subunit signature 221 241 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops11g00077 719 PRINTS U2 auxiliary factor small subunit signature 346 370 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops11g00077 719 PRINTS U2 auxiliary factor small subunit signature 202 221 IPR009145 GO:0000398|GO:0003723|GO:0089701
Rops11g00077 719 MobiDBLite consensus disorder prediction 142 177 - -
Rops11g00077 719 MobiDBLite consensus disorder prediction 85 117 - -
Rops11g00077 719 MobiDBLite consensus disorder prediction 685 700 - -
Rops11g00077 719 FunFam Zinc finger CCCH domain-containing protein 5 265 360 - -
Rops11g00077 719 MobiDBLite consensus disorder prediction 160 177 - -
Rops11g00077 719 MobiDBLite consensus disorder prediction 610 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00077 Rops-Chr11 1331283 1342409 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g00077 zf-CCCH 1.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00077 K24273 - cam:101495256 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00077 11 1331283 1342409 Rops11g00077 11 1331283 1342409 ECH