Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00075 ATGGGTGTGCGCAGTGCGCACCATGAGGAGGATGGGAACTCTTTCTTTGTTTATGCATTCACCAATCTCCAATCTCAATCTCAAGGGAATGGACACTCTGGCAGAGACAAATTCAACCCTGCATTATCTGCCCTCTTCAACACTACTCATATGGCTTCAAATCATGTATCAGCTGCAAACCATGCAGGGGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGTCCCCTTGTCACTCTTCCTCGCGAAGGGGAGAGAGTTTATTATTTCCCACAAGGTCATATGGAGCAGCTCGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAACCTGAAACGGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGCGAGGTGACAAGCCCAGATGATCCTCTGCCTGAACCTTCAAGGTGTACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACCAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGGCATGCAGATGATTGTCTGCCACCACTGGATATGACCCAGCAGCCACCATGGCAAGAATTGGTCGCAACTGATTTGCATGGGAATGAATGGCATTTCCGGCATATTTTTCGGGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTACGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCTGTTATATCTAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACGTTGTTTTCTGTATTTTATAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGTGTCAACAAATATCTTGAAGCTCGAAATCATAAACTTTCTGTTGGGATGAGGTTCAAAATGAGATTCGAGGGTGACGAAGTTCCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCATCTATCTGGGCTGATTCCGACTGGCGATCATTAAAGGTTCAATGGGATGAACCATCATCAATACCACGTCCTGATAGAGTTTCTCCATGGGAATTGGAACCACTTGTGTCTACCCCTCCTGCAAACTCCCAGCCAACCCAAAGAAACAAGAGATCACGGCCTCCCATTCTACCTTCAACAATGCCTGATTCTTCTCTGCAAGGTGTATGGAAATCACCAGTAGAATCTCCACCTTTCTCTTATCGTGATCCTCAACATGGACGAGACCTCTATCCATCACCCAGATTCAATTCCACTCCAACTAGCTTTCTTGGTTTTGCACTTAAAGAATCTGGAGAAAAGAGACATGGCGCTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTGGAGAATTCTATTGCAGAAGAAAGTCTACCAACAGTCACTTTGTCAGGAAGGGTGGGTGATGATAGGTCCGTCCCCTCTATGGATGCTGAATCTGATCAGCATTCTGAACCATCAAATGTTAATCGATCTGATATTCCTTCTGTAAGTTGTGATGCTGAAAAGTCATGCCTGCAGTCTCCTCAGGAGTCACAAAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCGTAGGAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTCTGTGGATCCACAAAAAAATGGCAGGTTGTCTACACTGACAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGCTAGAATTTTGCAGTGTTGTGAGGAAAATTTTCATCTACACAGCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGTCTTCCAATCAATGAAGAAGGTAAACCAAGCAAACTGGATTCGGAAGCAGCAGTCAATCTGGAGGACCAGTCATCTATTGTGGGGCCTGTTTTGAATGGGCTACGAGCGTGGAGAAAATGTCTTTGGTCAGATTCGTTTGAATGA 2130 0.4484 MGVRSAHHEEDGNSFFVYAFTNLQSQSQGNGHSGRDKFNPALSALFNTTHMASNHVSAANHAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLPEPSRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSIWADSDWRSLKVQWDEPSSIPRPDRVSPWELEPLVSTPPANSQPTQRNKRSRPPILPSTMPDSSLQGVWKSPVESPPFSYRDPQHGRDLYPSPRFNSTPTSFLGFALKESGEKRHGAGNGCRLFGIQLLENSIAEESLPTVTLSGRVGDDRSVPSMDAESDQHSEPSNVNRSDIPSVSCDAEKSCLQSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLRRKLEEMFDIKGELCGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTAEEVKKLSPKIGLPINEEGKPSKLDSEAAVNLEDQSSIVGPVLNGLRAWRKCLWSDSFE* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00075 709 SMART B3_2 174 276 IPR003340 GO:0003677
Rops11g00075 709 FunFam Auxin response factor 172 276 - -
Rops11g00075 709 SUPERFAMILY DNA-binding pseudobarrel domain 163 303 IPR015300 -
Rops11g00075 709 ProSiteProfiles B3 DNA-binding domain profile. 174 276 IPR003340 GO:0003677
Rops11g00075 709 MobiDBLite consensus disorder prediction 385 466 - -
Rops11g00075 709 Pfam Auxin response factor 300 382 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops11g00075 709 Gene3D - 171 276 IPR015300 -
Rops11g00075 709 ProSiteProfiles PB1 domain profile. 569 662 IPR000270 GO:0005515
Rops11g00075 709 Gene3D - 564 658 - -
Rops11g00075 709 FunFam Auxin response factor 337 409 - -
Rops11g00075 709 Pfam AUX/IAA family 564 659 IPR033389 -
Rops11g00075 709 Gene3D - 337 409 - -
Rops11g00075 709 MobiDBLite consensus disorder prediction 530 546 - -
Rops11g00075 709 FunFam Auxin response factor 564 658 - -
Rops11g00075 709 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 67 658 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops11g00075 709 MobiDBLite consensus disorder prediction 407 441 - -
Rops11g00075 709 MobiDBLite consensus disorder prediction 511 546 - -
Rops11g00075 709 CDD B3_DNA 172 274 IPR003340 GO:0003677
Rops11g00075 709 SUPERFAMILY CAD & PB1 domains 571 646 - -
Rops11g00075 709 Pfam B3 DNA binding domain 174 274 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00075 Rops-Chr11 1309638 1318450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00075 52 687 B3 DNA Binding Superfamily AT1G59750 72.256 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops11g00075 AUX_IAA 9.3e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00075 K14486 - gmx:100793224 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g00075 11 1309638 1318450 Rops11g00075 11 1309638 1318450 ECH