Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00071 ATGGAACTTTCCAGTCAAGGAGAAATCCCAATCCCAATCCCAATAAACACTAGTTATAGTGGTGGAGGAGGGCATGGGCACATGATTCATCATGACCATAATCACATCATCTCCCAAAACCCTTCAAATATGCAAGCAGGCCTGGGGGATCATGATCATGGACCCTACAAGAAAGTGGTGAGGTACAGAGAATGCCTAAAGAACCATGCAGCTGCCATGGGAGGGAATGCCACTGATGGGTGTGGTGAGTTCATGCCAAGTGGAGAAGAGGGAACCATAGAAGCTTTTAACTGCTCTGTCTGCCACTGTCACAGAAACTTCCACCGAAAGGAAGTGGAAGGTGAGCCCTACTCATCTGACTATCACCACCATTTCAACAAGTTGGGGAGAAAATACATTCTGGGTCATCATCACAAGAACATCATACCTCCTGAGTCTCTGGGTTACCCTACTACAGGTAACATTCTACCCTCAAGAACTGTAGCACCCCACCAGATGATAATGCCCGACCTCCCTTCCGAATCTGATGAACAAGAGGAGGCCGGTGGCATTGGCATGGTAGCTAGACCTCAACAGTTTGTGAAGAAAAGATTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAAATGCTCAACTTTGCTGACAAGGTTGGGTGGAAAATTCAGAAGCAAGAGGAGTCTGTAGTGCAACAGTTCTGCCAAGAGATTGGGGTCAAAAGAAGAGTGCTCAAGGTTTGGATGCACAACAATAAGCACAATCTAGCCAAAAAGAATCCTCCAACTACAACTAATTAA 795 0.4629 MELSSQGEIPIPIPINTSYSGGGGHGHMIHHDHNHIISQNPSNMQAGLGDHDHGPYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEAFNCSVCHCHRNFHRKEVEGEPYSSDYHHHFNKLGRKYILGHHHKNIIPPESLGYPTTGNILPSRTVAPHQMIMPDLPSESDEQEEAGGIGMVARPQQFVKKRFRTKFTQEQKEKMLNFADKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNPPTTTN* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00071 264 MobiDBLite consensus disorder prediction 1 31 - -
Rops11g00071 264 NCBIfam homeobox domain, ZF-HD class 195 251 IPR006455 -
Rops11g00071 264 Gene3D - 186 257 - -
Rops11g00071 264 SUPERFAMILY Homeodomain-like 193 256 IPR009057 -
Rops11g00071 264 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 46 254 - -
Rops11g00071 264 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
Rops11g00071 264 FunFam Zinc-finger homeodomain protein 2 185 256 - -
Rops11g00071 264 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 61 112 IPR006456 -
Rops11g00071 264 Pfam ZF-HD protein dimerisation region 60 112 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00071 Rops-Chr11 1150832 1152729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00071 1 264 ZF-HD Transcription Factor Family AT2G02540 47.213 6.49e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops11g00071 ZF-HD_dimer 3.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00071 - - cill:122310668 379.793