Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00067 ATGGAAAGCATACCGCATCCAATTCCCAGAACAGTTGAAGAGGTCTTCGCCGACTTTAAGGGGAGACGAGCTGGTTTGATTAAGGCCCTCACTACTGACGTGGAAAATTTTTACCAGCAGTGCGATCCTGAAAAGGAGAACTTGTGTCTATATGGATTTCCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAGGAAGTCCCTCCTGAACTTCCTGAGCCAGCATTGGGTATAAACTTTGCTAGGGATGGGATGCAAGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTGGCTGTTGCTTTCTACTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGACTTTTTCAGATGATAAATGATCTGCCAACTATCTTTGAAGTTGTGACAGGAACTGTTAAGCAATCAAAGGATCAATCAGTTGCTCACAACAATGGAAGCAAAAGCAAATCAAGTGGAAAGTCCCGCCAATCTGAGTCTCAGGCCAAGGGAGTGAAGATGTCTGCACTACCCAAAGAAGAGTATGAGAGTGGCGAAGAAGATGACGAACAAGGTGCAACATGTGGGGCTTGTGGTGATAATTATGCCAACGATGAGTTCTGGATCTGTTGTGATATGTGTGAGAGATGGTTCCATGGTAAATGTGTTAAAATCACCCCTGCGAAGGCTGAGCATATCAAGCAATACAAGTGCCCGAGTTGCAGTAACAAGAGGGCTAGGGTTTAG 750 0.448 MESIPHPIPRTVEEVFADFKGRRAGLIKALTTDVENFYQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGTVKQSKDQSVAHNNGSKSKSSGKSRQSESQAKGVKMSALPKEEYESGEEDDEQGATCGACGDNYANDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00067 249 ProSiteProfiles Zinc finger PHD-type profile. 193 245 IPR019787 -
Rops11g00067 249 MobiDBLite consensus disorder prediction 145 172 - -
Rops11g00067 249 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Rops11g00067 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Rops11g00067 249 PANTHER CPG BINDING PROTEIN 9 248 IPR045104 GO:0006355|GO:0042393
Rops11g00067 249 Pfam PHD-finger 196 245 IPR019787 -
Rops11g00067 249 CDD PHD_AL_plant 196 245 IPR044104 -
Rops11g00067 249 FunFam PHD finger alfin-like protein 188 244 - -
Rops11g00067 249 SUPERFAMILY FYVE/PHD zinc finger 185 246 IPR011011 -
Rops11g00067 249 SMART PHD_3 195 243 IPR001965 -
Rops11g00067 249 ProSitePatterns Zinc finger PHD-type signature. 196 242 IPR019786 -
Rops11g00067 249 MobiDBLite consensus disorder prediction 145 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00067 Rops-Chr11 996519 1001509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00067 1 246 Alfin-like Transcription Factor Family AT1G14510 79.839 1.46e-132 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Rops11g00067 Alfin 8.1e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00067 K26274 - gmx:100807826 458.373