Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00065 ATGGTAATTGCGGCAGCAACCATGAGCCTGAGCCTGAGCCAAAGCCACAGCCACAGCCATGACGACATCATCACCATTAACGATGACAACAACAACAACAACAAGCCAGATGATCATGCATACGACATGGTGATGCCAGGGTTTCGGTTCCACCCAACCGAAGAAGAGCTCGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGTTTCAATGTTGAGCTTATTACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCCCTGGCAGCAATTGGTGAGAAGGAGTGGTACTTTTATGTGCCTAGAGATAGAAAGTATCGCAACGGTGATCGTCCCAATCGTGTTACAACCTCTGGATATTGGAAAGCAACAGGAGCTGATAGGATGATTCGAACCGAGAACTTCCGGTCAATCGGGCTGAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCAAAAGGCATTCGAACCAGTTGGATCATGAATGAGTATCGTTTGCCACAACATGAAACTGAAAGATATCAAAAGGCTGAGATATCGCTTTGCCGTGTTTACAAGAGAGCTGGTGTGGAAGACCATCCATCGGTCCCTCGTTGTCTCCCAACGCGGCCATCCTCATCAAGAGGTTCTCATTCAGACAAGAAGCAAAATGAAATGGTTAACCTGACCATGGAATTTCTGGGCCTTCCACAGCAACAAATTGTTGAGAAAGTAAATGAAATGGAGGGAAGCAGCGCAGGCACAGCTCTCGGGCTTCCCAATCACAATGCTTGCCTTACACTGAGCACAACTACGGGACTCCCAGTTCCACTGGAGGATGACGAAGGGTTGATACTCATGCAGCAGCAATCTAAGCAAGCACAAGCAGCTTCCTCCTCTTTATGTGGCACCTTCTTCCCAGCGGGCTCTCCTTCCAACATTGCAATGATGGATGATCTCAATAGGCTAGTAAGTTATCAACAACAATTCTACAGTCTTCAAAGTTACCCCAATCAGTTTTCTAGTTTGCTAATGCAACCACCACCTGTGCCTCTAAACTCCCTGCCCAATTCACTTTCAACCGCCTTCTCTGACCGACAGTGGGAGTGGAATCCAATCCCCGAGGCAAACCGAGAGCACAGTAACATGTCCTTCAAGTAA 1152 0.4774 MVIAAATMSLSLSQSHSHSHDDIITINDDNNNNNKPDDHAYDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSVPRCLPTRPSSSRGSHSDKKQNEMVNLTMEFLGLPQQQIVEKVNEMEGSSAGTALGLPNHNACLTLSTTTGLPVPLEDDEGLILMQQQSKQAQAASSSLCGTFFPAGSPSNIAMMDDLNRLVSYQQQFYSLQSYPNQFSSLLMQPPPVPLNSLPNSLSTAFSDRQWEWNPIPEANREHSNMSFK* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00065 383 SUPERFAMILY NAC domain 44 190 IPR036093 GO:0003677|GO:0006355
Rops11g00065 383 ProSiteProfiles NAC domain profile. 44 191 IPR003441 GO:0003677|GO:0006355
Rops11g00065 383 Gene3D NAC domain 53 194 IPR036093 GO:0003677|GO:0006355
Rops11g00065 383 Pfam No apical meristem (NAM) protein 46 170 IPR003441 GO:0003677|GO:0006355
Rops11g00065 383 MobiDBLite consensus disorder prediction 196 218 - -
Rops11g00065 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 43 285 - -
Rops11g00065 383 FunFam NAC domain-containing protein 35 53 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00065 Rops-Chr11 958640 960841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00065 43 383 NAC Transcription Factor Family AT2G02450 49.751 9.22e-115 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops11g00065 NAM 3.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00065 - - gmx:100792622 505.753