Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00059 ATGATATCTTCGTGGACGCCAAGCATCAGCTTCACAAGCGGGAATAGTTTAGCTCTGAATAAGGTGCCAACAAAGAAGATAGATAAATTTGTCCGGCAGTTACCTTTTCTTCCTCCACTACATATCAACTGCATGCGGCGCACAGTGGACGCTGAATTTTCTGCAGCAAAAGCCTACACATCCTCGACTTCCCTCCCCGAGATTTTAGATGGAGATGTGTACAAGTACTACGCTGATGGAGAATGGAAGAAATCTTCTTCTGGGAAAAGTGTTTCTATCATTAACCCCACTACCAGAAAGACTCAATACGTAGTTCAAGCTTGTTCACAAGAGGAGGTTAATAAGGTCATGGATTCAGCAAAATCTGCACAAAAGTCATGGGCAAAGACCCCACTCTGGAAGCGGGCTGAACTTCTTCACAAGGCTGCTGCTATCCTCAAAGAGCACAAGGCTGAAATTGCAGAGTGCCTGGTGAAAGAAATAGCAAAGCCAGCCAAAGATGCAGTTACAGAGGTGGTAAGATCTGGGGATTTGGTTTCTTACTGTGCTGAAGAAGGGGTGAGGATTCTGGGAGAGGGAAAGTTCTTGGTATCGGATAGCTTTCCTGGAAATGAAAGGACGAAATATTGCCTCACCTCCAAGATTCCATTGGGAGTGATTTTAGCTATTCCACCTTTTAACTATCCTGTCAATCTTGCTGTCTCAAAAATTGCTCCGGCGCTGATAGCTGGAAATTCCATTGTGCTCAAGCCTCCAACTCAGGGAGCTGTTTCTGCTCTGCACATGGTTCATTGCTTTCATTTGGCTGGTTTTCCCAAAGGCCTAATCAGCTGTATTACTGGTAAAGGCTCAGAAATTGGTGACTTTCTTACGATGCATCCTGGAGTGAACTGTATAAGCTTCACTGGTGGAGATACTGGCATTGCAATTTCAAAGAAGGCAGGCATGATTCCTCTGCAAATGGAATTGGGAGGAAAAGATGCCTGCATTGTACTTGAGGATGCCGACCTGGATTTGGTTGCTGCAAACATTATAAAAGGAGGTTTTTCATACAGTGGTCAGAGGTGCACTGCAGTTAAGGTTGTCCTGGTATTGGAATCCGTTGCCGATGCTTTGGTTGAGAAAGTGAAGGCCAGGGTGGCAAAACTAAGTGTTGGGCCACCAGAGAATGACTGTGATATCACCCCGGTTGTGTCTGAATCATCAGCCAACTTCATTGAAGGCCTTGTCATGGATGCTAAACAGAAAGGAGCAACATTCTGCCAGGAGTACAAAAGAGAAGGAAATCTCATTTGGCCTTTGTTACTGGATGATGTTAGGCCGGACATGAGAATAGCATGGGAAGAGCCATTTGGACCAGTTTTGCCGGTAATTAGGATCAATTCTGTTGAAGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACAAAGGATGTCAACAAAGCAATATTGATAAGTGATGCAATGGAAACGGGAACGGTTCAGATAAATTCTGCCCCCGCTCGTGGACCAGATCATTTTCCATTTCAGGGCATAAAGGACAGTGGGATTGGATCTCAAGGGATTACCAACAGCATAAATATGATGACCAAGGTCAAAACGACTGTGATCAACTTACCCGGCCCTTCTTATACCATGGGCTAG 1665 0.4492 MISSWTPSISFTSGNSLALNKVPTKKIDKFVRQLPFLPPLHINCMRRTVDAEFSAAKAYTSSTSLPEILDGDVYKYYADGEWKKSSSGKSVSIINPTTRKTQYVVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAEIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCITGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVLESVADALVEKVKARVAKLSVGPPENDCDITPVVSESSANFIEGLVMDAKQKGATFCQEYKREGNLIWPLLLDDVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDVNKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKVKTTVINLPGPSYTMG* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00059 554 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 325 515 - -
Rops11g00059 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 325 515 IPR016163 GO:0016620
Rops11g00059 554 PANTHER ALDEHYDE DEHYDROGENASE 51 553 - -
Rops11g00059 554 Pfam Aldehyde dehydrogenase family 82 541 IPR015590 GO:0016491
Rops11g00059 554 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 80 338 - -
Rops11g00059 554 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 321 328 IPR029510 GO:0016491
Rops11g00059 554 SUPERFAMILY ALDH-like 73 545 IPR016161 GO:0016491
Rops11g00059 554 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 80 541 IPR016162 GO:0016491
Rops11g00059 554 CDD ALDH_F11_NP-GAPDH 73 545 - -
Rops11g00059 554 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 349 360 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00059 Rops-Chr11 723424 729680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00059 67 554 Aldehyde Dehydrogenase Gene Family AT2G24270 90.779 0.0 931
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00059 K00131 - gmx:100789100 942.184