Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00057 ATGTGTGACAACAAGGGTAATAGCGAGGGTCACTCGACTTTGCTCCTTGGCAAGTACGAGCTGGGCCGCGTGCTGGGTCATGGAACCTTCGCGAAGGTGTATCACGCGAGGAACTTGCAGACGGGGAAAAACGTGGCGATGAAGGTGGTGGGAAAGGAGAAGGTAATAAAGGTAGGGATGATGGAGCAGATAAAGAGGGAGATCGCGGTGATGAAGATGGTGAAGCATCCCAACATAGTGGAGCTCCACGAGGTAATGGCCACCAAATCCAAGATCTACATCGCCATGGAGCTGGTTCGCGGCGGAGAACTCTTCAACAAGGTCGCCAAGGGCCGACTGAAGGAAGACATCGCCAGAGTCTACTTTCAGCAGTTGATCTCCGCCATCGATTTCTGCCACAGCCGCGGCGTTTACCACCGCGACCTCAAGCCCGAGAACCTGCTTCTCGACGAACACGGCAACCTCAAAGTCTCCGACTTCGGCCTCAGCACCTTCTCCGAACACCTGAGGCAGGACGGCTTGTTGCACACCACGTGCGGCACTCCCGCGTACGTGTCGCCGGAGGTGATTGCAAAGAAAGGCTACGACGGTGTGAAGGCTGACATATGGTCCTGTGGGGTCATCCTCTACGTCCTTCTGGCTGGCTTCTTACCCTTTCAAGATGACAACTTGGTAGCTATGTACAAGAAAATTTACAGGGGTGACTTCAAATGTCCACCCTGGTTCTCTCTTGAAGCTCGAAGGCTTATCACCAAGCTCCTCGACCCCAACCCTAACACCCGAATCACCATCTCCAAGATCATGGACTCCTCTTGGTTCAAGAAATCGGTGCCCAAGAACATGCCCAGGAATAAAGAGGAGGAGAAGGAGTTTGATTTCGTGGACAAGTTCGAGAATCCGGCGACCATGAATGCATTCCACATAATTTCGCTGTCGGAAGGGTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAGGAGCTGAGGTTCGCCACCGCTGGGACGCCGAGCACGGTCATATCGAGACTGGAGGAGGTGGCCAAGGCGGTGAAGTTTGACGTGAAGAGCAGCGACTCCAAGGTGAGGCTTCGGGGGCAGGAATGTGGGAGGAAGGGGAAGCTTGCCATTGCGGCTGATATTTACGCCGTAACGCCGTCGTTTCTGGTGGTGGTGGTGAAAAAGGACAATGGTGACACCTTGGAGTACAACCAGTTCTGTAGCAAAGAGCTTCGTCCTGCGCTCCAAGACATCTTCTGGACTTCTCCTGAGAAGTCTACACCTGCTTGA 1290 0.5388 MCDNKGNSEGHSTLLLGKYELGRVLGHGTFAKVYHARNLQTGKNVAMKVVGKEKVIKVGMMEQIKREIAVMKMVKHPNIVELHEVMATKSKIYIAMELVRGGELFNKVAKGRLKEDIARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEHGNLKVSDFGLSTFSEHLRQDGLLHTTCGTPAYVSPEVIAKKGYDGVKADIWSCGVILYVLLAGFLPFQDDNLVAMYKKIYRGDFKCPPWFSLEARRLITKLLDPNPNTRITISKIMDSSWFKKSVPKNMPRNKEEEKEFDFVDKFENPATMNAFHIISLSEGFDLSPLFEEKKREELRFATAGTPSTVISRLEEVAKAVKFDVKSSDSKVRLRGQECGRKGKLAIAADIYAVTPSFLVVVVKKDNGDTLEYNQFCSKELRPALQDIFWTSPEKSTPA* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00057 429 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00057 429 Gene3D Phosphorylase Kinase; domain 1 11 98 - -
Rops11g00057 429 CDD CIPK_C 304 416 - -
Rops11g00057 429 FunFam Non-specific serine/threonine protein kinase 9 296 - -
Rops11g00057 429 SUPERFAMILY Protein kinase-like (PK-like) 15 282 IPR011009 -
Rops11g00057 429 ProSitePatterns Protein kinases ATP-binding region signature. 25 52 IPR017441 GO:0005524
Rops11g00057 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Rops11g00057 429 FunFam Non-specific serine/threonine protein kinase 298 420 - -
Rops11g00057 429 Gene3D Transferase(Phosphotransferase) domain 1 99 279 - -
Rops11g00057 429 Gene3D Kinase associated domain 1, KA1 297 421 - -
Rops11g00057 429 Pfam NAF domain 300 356 IPR004041 GO:0007165
Rops11g00057 429 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00057 429 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00057 429 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Rops11g00057 429 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 415 - -
Rops11g00057 429 FunFam Non-specific serine/threonine protein kinase 10 98 - -
Rops11g00057 429 CDD STKc_SnRK3 18 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00057 Rops-Chr11 624956 626834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00057 6 429 CBL-interacting serine-threonine protein kinases AT4G30960 73.165 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Rops11g00057 Pkinase 4.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00057 - K07198 var:108321114 735.332