Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00049 ATGGCTATGCTCCGCAAATTGTTCTTTCGCAAGCCCCCTGATGGCCTCCTCGAGATCTGCGAGAGAGTTTACGTTTTTGATTGCTGCTTCACAACGGATGTTTGGAATGAAGAGAAGTACAAAGTGTACATGGATGCAATAGTTGGTCAACTTAGAGAGAACTTGCCTGATGCTTCCATTCTGGTTTTCAATTTCCGTGAGGAAGAGACCAAGAGTATGATGGCCAACATCATGTCTGAGTATGACATTACTATCATGGACTATCCCCGCCGCTATGAGGGTTGCCCCGTCCTCAACATGGAGCTCATCCACCACTTTCTAAGGTCTGGTGAAAGCTGGCTCTCACTTGGCCACCAGAATGTCTTGTTAATGCATTGTGAACGTGGTGGTTGGCCCGTTTTGGCTTTCATGTTGGCTGCATTGTTGATTTATAGAAAGGTTTATACTGGGGAGCAGAGGACTTTGGATATGGTTTACAAGCAGGCTCCGCAGGAACTTGTGCATTTGTTGACTCCTTTGAATCCCATGCCTTCCCAACTTAGGTATCTGCAGTATGTTTCCAGGAGGAATGTGGCCTTGGATTGGCCTCCGCTGGACAGGGCACTCATGTTGGACTGCATAATTCTCAGATTCATCCCAAACTTTGATGGGCAAGGTGGTTGTCATCCCCTGTTTAGAATTTACGGACAGGATCCTTCTGGTGCTGATAAAAATCCAAAAATGTTGTACTCAATGCCAAAGAGAAGCAAAAATGTCCGGACTTACAAGCAGGGAGAATGTGAACTAATTAAAATTGATATCAATTGCCATATTCAAGGTGATGTCGTGATTGAGAGCATTAACTTGAATGGTGACATGGAGCATGAATTGATGATGTTCCGAGTCATGTTCAACACGGCCTTTGTTAGATCTAATATTCTGATTCTTAATCGGGATGAAATTGACGTTTTATGGGATGCTAAAGATCACTTTCCAAAAGATTTCAGAGCTGAGATCCTTTTCTCAGAGATGGATGCTGCTGCAGCAGTTATTGCGGATGGTACCTCATGCTTTGAGGAGAAGGAGGGACTGCCAATGGAAGCATTTGCCAAGGTTCAAGAGATCTTTAGCCATGTGGACTGGATGAACCCCAAGGCAGATGCTGCACTAAATGTGCTCCAACAGATAAGTGCTTCGGCTATTGTGAACGACAAGTTGGATACAGTTTCTGATCAATCTATGGAAACTGGCACTTCATTGCATGAAACAGGTCCCAGAATGCCTCAGGGGAATTCAAATGAAGCAACGCAGTCTTTGAAGCGATCCCTCAATAATGATGTGAGTGAAAAAGAGGATAAGACAAACAAGGTCGATGCTAATTCACAGCCTAGAAAATCTGACATCATCTGTCAAGAGACACCCAGCTCATCTGGAAGAACCTTGGGATCCAGTAAATGTCCGACAGGGTCTACAAATCTTGACGTAAAACTGCAGGCATCTGATATTGCCTCATCTGGTTCTCTGGAGACTTCTCTTTCCCCTCAAACGCCTCCTCTGCGGCCTCCCTCAACTAGTCGTGCTAAAGAAGTTCATGATTCTCCTCCCCACACGGAATCAACTCCTCATCATATTTCGTCTTCGCAATCAAGACACCAATCACAAGACAATAGTCATTCACCTATTTCTAACTCTACTTCTGGGACCCAATTGTTATCTGCTTTTCATAGTAAGTCATCAGCTGAAGCTATTTCCCATCCTTCAGTTTCAGCAGTTACTTCAATTCAGCCATCCCCTTCACTTTCTTCCAAAACACCTGTGAATGAGATTCCACTTGTTAGAACAAGACTTGAGTCTTCCCCTTCACAACTTCCAACTCCACCCCCTCCTCCTACCCCTCCGCTAAAAGATCACAAACCAGTTAGAGCTGGACCTCCACTTCCACCACCTCCTCCAAAGAAGGAACTACATGTTAAAGATGGACCCCCTCCCCCTTCGTCTGCTATGAATGAGGAGCCACATGTTAGAGATGGACCCCCTCCCCCACCTCCGCCTCTTCTAAAAGAGGAGCAACCTGTTAGTTTTAAACCCCCACCACCCCCACCACCTCCTGGTCTTTCGGGGGAAGTTGCAGGTCCTACTATAGCATCACCACCACCAGCGCCACCACCACCACCACCACTTTCCTCTAATCATCCTAATCCTTCATTGCAAAAGTCTTCACCTGCTCCTACAGCACCAGCTGCTCCACCACCTCCAACTCCCTTTGGTAAAGGAGGTCTAAAACCAGGTAGTGCTTTTCCAAATAATGCGTCAACAGGGCCTCGGTCTGGTTCACCAAACAGCTCAAAGGGACGAATTCTATCACGTACTATTAGCTCAAAGAGTAACAACAAAAAGTTGAAGCCATTGCATTGGCTAAAATTATCTAGAGCAGTGCAAGGAAGTTTGTGGGCTGAGACGCAGAAATCTGGTGAAGCTTCCAAAGCCCCTGAAATTGATATGTCTGAGCTTGAGAGTCTCTTCTCAGCAGCAGCCCCAAGTTCAGGCTCTGCCAAGAAATCAAATGTCCAAAGCTCAGTTAGGCCTAAATCTGATAAAGTGCAACTGATTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCAAAAGTGAAGGTGCCGTTGCATGATTTAACGAGCTCAGTGCTAGAGTTGGAAGAGTCAGTGCTAGACTCTGATCAGGTTGAAAACCTCATAAAGTTTTGTCCTACAAAAGAGGAAATGGAAGTAATCAAGGGTTATGATGGGGAAAAGGAGAAGTTAGGGAGATGCGAACAGTTTTTCATGGAGTTGATGAAAGTACCACGGGTAGAATCCAAGCTCAGAGTTTTTTCATTCAAGATTCAGTTCCACTCTCAGGTTTCCGACCTTAGAAATAGCCTGAATGTTGTGAACGCTGCTTCAGAAGAGATAAGGAATTCTGTCAAATTAAAGAGAATTATGCAAACAATACTTTCTCTAGGAAATGCTTTGAACCAAGGAACTGCCAGGGGTTCTGCTATTGGATTCAGATTAGATAGCCTTCTTAAACTCACCGAGACACGAGCACGGAACAACAAGATGACTCTCATGCATTATCTTTGTAAGGTGCTAGCTGACAAATTACCAGAAGTTTTAGACTTCTCCAAGGATCTTGCTAACCTAGAGCCAGCAGCAAAGGTCCAATTGAAGTTTCTGGCAGAGGAGATGCAAGCTATAAACAAAGGATTAGAAAAAGTTGTACAGGAAATATCCACCTCTGAAAATGATGGTCCTATATCAGAAAATTTCTGCAAGAAATTGAAAGGGTTCCTCTGTTCTGCTGAGGCTGAAGTCCGTTCACTGGCTTCATTATATTCTGGCGTGGGTAGGAACGTGGATGCATTGATTCTTTATTTTGGTGAAGATCCATCCCGCTGCCCATTTGAGCAAGTTGTCACAACTTTGCTCAACTTTACTAGAATGTTCAACAAAGCACATGAAGAAAACTGCAAGCAGCTAGAGCTTGAAATGAAGCGAACGGCAGAAATGGCACATGTAGTAGTAGTAGCTGACGCTGAGAACCAAAACGAAAAACTGCATTACACTGCAAAGAGATAG 3600 0.4447 MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTDVWNEEKYKVYMDAIVGQLRENLPDASILVFNFREEETKSMMANIMSEYDITIMDYPRRYEGCPVLNMELIHHFLRSGESWLSLGHQNVLLMHCERGGWPVLAFMLAALLIYRKVYTGEQRTLDMVYKQAPQELVHLLTPLNPMPSQLRYLQYVSRRNVALDWPPLDRALMLDCIILRFIPNFDGQGGCHPLFRIYGQDPSGADKNPKMLYSMPKRSKNVRTYKQGECELIKIDINCHIQGDVVIESINLNGDMEHELMMFRVMFNTAFVRSNILILNRDEIDVLWDAKDHFPKDFRAEILFSEMDAAAAVIADGTSCFEEKEGLPMEAFAKVQEIFSHVDWMNPKADAALNVLQQISASAIVNDKLDTVSDQSMETGTSLHETGPRMPQGNSNEATQSLKRSLNNDVSEKEDKTNKVDANSQPRKSDIICQETPSSSGRTLGSSKCPTGSTNLDVKLQASDIASSGSLETSLSPQTPPLRPPSTSRAKEVHDSPPHTESTPHHISSSQSRHQSQDNSHSPISNSTSGTQLLSAFHSKSSAEAISHPSVSAVTSIQPSPSLSSKTPVNEIPLVRTRLESSPSQLPTPPPPPTPPLKDHKPVRAGPPLPPPPPKKELHVKDGPPPPSSAMNEEPHVRDGPPPPPPPLLKEEQPVSFKPPPPPPPPGLSGEVAGPTIASPPPAPPPPPPLSSNHPNPSLQKSSPAPTAPAAPPPPTPFGKGGLKPGSAFPNNASTGPRSGSPNSSKGRILSRTISSKSNNKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDMSELESLFSAAAPSSGSAKKSNVQSSVRPKSDKVQLIEHRRAYNCEIMLSKVKVPLHDLTSSVLELEESVLDSDQVENLIKFCPTKEEMEVIKGYDGEKEKLGRCEQFFMELMKVPRVESKLRVFSFKIQFHSQVSDLRNSLNVVNAASEEIRNSVKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNNKMTLMHYLCKVLADKLPEVLDFSKDLANLEPAAKVQLKFLAEEMQAINKGLEKVVQEISTSENDGPISENFCKKLKGFLCSAEAEVRSLASLYSGVGRNVDALILYFGEDPSRCPFEQVVTTLLNFTRMFNKAHEENCKQLELEMKRTAEMAHVVVVADAENQNEKLHYTAKR* 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00049 1199 ProSiteProfiles Formin homology-2 (FH2) domain profile. 783 1182 IPR015425 -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 404 485 - -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 532 613 - -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 707 724 - -
Rops11g00049 1199 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Rops11g00049 1199 Coils Coil 426 446 - -
Rops11g00049 1199 SUPERFAMILY Formin homology 2 domain (FH2 domain) 710 1173 - -
Rops11g00049 1199 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 437 453 - -
Rops11g00049 1199 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Rops11g00049 1199 SMART PTEN_C2_2 197 336 IPR014020 -
Rops11g00049 1199 Pfam Formin Homology 2 Domain 788 1156 IPR015425 -
Rops11g00049 1199 Gene3D - 199 340 - -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 404 436 - -
Rops11g00049 1199 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 758 788 - -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 614 644 - -
Rops11g00049 1199 SMART it6_source 783 1198 IPR015425 -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 497 788 - -
Rops11g00049 1199 Coils Coil 1063 1083 - -
Rops11g00049 1199 PANTHER FORMIN-J 1 697 - -
Rops11g00049 1199 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Rops11g00049 1199 Gene3D Formin, FH2 domain 782 1167 IPR042201 -
Rops11g00049 1199 Coils Coil 1157 1177 - -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 836 857 - -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 736 750 - -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 667 700 - -
Rops11g00049 1199 MobiDBLite consensus disorder prediction 454 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00049 Rops-Chr11 497949 516397 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00049 735 1175 Protein tyrosine phosphatase (PTP) family AT5G58160 72.562 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00049 - - aprc:113848377 1803.88