Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00033 ATGGGTTTGGGAGTATTTGGATCTGTTCTGGTTTTGACACTCTTGTTCAAGCATGTGGCTTCTCAGCAACCAAATACTGACGAGTTTTTTGTGTCTGAGTTCTTGAAGAAGATGGGTTTAGCATCCTCCCAAGCCCACAACTTCTCTACTTCTTCTGTTTGTTCATGGGAAGGGGTTTTCTGTGATGCCAATAAAGAACATGTTGTTGACTTAATGCTTTCTGGTATGGGCCTCTCTGGCCCTATTCCTGATACCACCATAGGCAAGCTCAGCAAGCTTCAAACTTTGGATCTTAGCTACAACAAAATCACTGCCTTGCCTTCAGATTTCTGGAGTTTAACCTCTCTCAAGACCCTTAACCTCTCCTCCAATCAGATTTCTGGTTCATTGACTAATAACTTCGGCAACTTTGGTTTGCTAGAAAATTTTGATTTGTCCAGCAACAATTTCTCTGACGAAATTCCTGAAGCCATGAGCTCCCTTGTGAATCTGTGGGTCCTCAAACTTGACCACAACAGGTTTGCACGGAGCATTCCTTCTGGAATTCTCAAGTGTCGGTCTCTGATTTCAATTGACCTTTCATCAAATCAGCTGAATGGAACACTTCCAGATGGTTTTGGCGCTGCTTTTCCCAAGCTTAGGACCTTGAACCTTGCTGGGAATAATATTTATGGTCGTATTTCAGATATTTCTGGGTTAAAGTCCATTGTGAGCCTCAACATATCAAGCAATTCGTTTCAGGGTTCTGTCATGGGGGTGTTTCAAGGAAGGTTGGAGGTCGTGGACCTTGGCAGAAACCAATTTCAAGGTCACATTCCTCAGGTACAGTACTACTCTAATTACAATTGGTCTCATTTAGTTCATCTGGATTTGTCAGAGAATCAGCTTGGTGGGGAAATTTTCCAAGATTTGAACCAGTCCTTGAATCTAAAGTACCTCAATCTTGCACACAATAGATTTAGTAGGCAGAAATTCCCACAGATTGAAATTCTCCCAGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTTGTTGGTCACATTCCTGATGAAATCTTACAACTGGGTAATTTGAATGCACTTGATCTTTCTATGAATCATCTTGAGGGGAAAATTCCCTTACTGAATAATAAACACCTCCAAGTTCTTGACCTTTCATGCAACAATTTGAGTGGAGCAGTCCCTCCATCTGTCTTAAAGAAACTCCCGTGGATGGAGAAATACAACTTCTCTTATAATTACTTAACCCTCTGTGCTTCAGAAATCAAACCTGATATCTTTCAAACAGCATTCTTTGGATCAGTTAACAGTTGCCCAATTGCTGCAAACCCACGCCTTTTCAAAAGAAGAGCCACTGGACATAAGGGAATGAAACTGGCTCTGGTATTGACCTTCTCAATGATCTGTGTGCTTGCTGGGCTTTTGTTCATAGCATTTGGTTGCCGAAGGAAAACAAAAATGTGGGAAATTAAGCAAACTTCATACAAAGAAGAACAGAATATTTCAGGTCCCTTTTCCTTCCAGACTGATTCAACAACTTGGGTGGCTGATGTTAAGCAAGCAACATCAGTCCCAGTAGTAATCTTTGAGAAGCCATTGTTGAATATTACATTTGCAGACCTCTTGTCTGCAACTTCAAATTTTGACAGGGGTACCCTTTTAGCTGAAGGAAAATTTGGGCCTGTCTATAGAGGCTTTCTGCCTGGTGGCATTCATGTAGCAGTTAAAGTTTTGGTTGCTGGGTCTACATTGACAGATGAAGAAGCTGCAAGAGAGCTTGAGTTTCTTGGTAGAATCAAGCACCCCAACCTTGTTCCTTTAACTGGATATTGTGTAGCTGGGGATCAGAGGATTGCCATATATGATTACATGGAAAATGGGAACTTGCAAAATTTGCTTTATGACCTGCCACTTGGGGTGCAAAGCACAGATGACTGGAGCACAGACACGTGGGAAGAAGCTGACAACAATGGGATTCAAAATGTTGGGTCTGAAGGATTGCTCACAACTTGGAGATTTCGCCACAAGATTGCCCTTGGCACTGCCCGAGCATTGGCATTTTTGCATCATGGATGCTCACCACCAATAATTCACAGAGCTGTTAAAGCTAGCAGTGTTTATTTGGATTATGACTTGGAGCCAAGGTTGTCCGATTTTGGGTTGGCTAAGATTTTTGGAAGTGGCTTGGATGATGAGATTGCACGTGGTTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATTTGACTTACCAACACCAAAATCTGATGTATATTGTTTTGGGGTTGTTCTGTTTGAGCTATTAACCGGAAAGAAGCCAGTTGGAGATGATTACCCTGATGATAAAGAAGCAACTTTGGTAAGTTGGGTCAGAGGATTGGTAAGGAAAAACCAAGCTTCAAGAGCTATTGATCCCAGAATTCGTGATACAGGACCAGATGAACAAATGGAGGAGGCTCTTAAGATTGGCTATCTTTGCACGGCTGACCTACCTTTCAAGAGACCAACCATGCAGCAGATAGTTGGACTTCTAAAAGATATTGAACCTGCAGCTAGTTAG 2565 0.4203 MGLGVFGSVLVLTLLFKHVASQQPNTDEFFVSEFLKKMGLASSQAHNFSTSSVCSWEGVFCDANKEHVVDLMLSGMGLSGPIPDTTIGKLSKLQTLDLSYNKITALPSDFWSLTSLKTLNLSSNQISGSLTNNFGNFGLLENFDLSSNNFSDEIPEAMSSLVNLWVLKLDHNRFARSIPSGILKCRSLISIDLSSNQLNGTLPDGFGAAFPKLRTLNLAGNNIYGRISDISGLKSIVSLNISSNSFQGSVMGVFQGRLEVVDLGRNQFQGHIPQVQYYSNYNWSHLVHLDLSENQLGGEIFQDLNQSLNLKYLNLAHNRFSRQKFPQIEILPGLEYLNLSKTSLVGHIPDEILQLGNLNALDLSMNHLEGKIPLLNNKHLQVLDLSCNNLSGAVPPSVLKKLPWMEKYNFSYNYLTLCASEIKPDIFQTAFFGSVNSCPIAANPRLFKRRATGHKGMKLALVLTFSMICVLAGLLFIAFGCRRKTKMWEIKQTSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVAGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEADNNGIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDDEIARGSPGYVPPEFSQPEFDLPTPKSDVYCFGVVLFELLTGKKPVGDDYPDDKEATLVSWVRGLVRKNQASRAIDPRIRDTGPDEQMEEALKIGYLCTADLPFKRPTMQQIVGLLKDIEPAAS* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00033 854 Pfam Leucine rich repeat 82 126 IPR001611 GO:0005515
Rops11g00033 854 Gene3D Phosphorylase Kinase; domain 1 508 623 - -
Rops11g00033 854 Pfam Leucine Rich repeat 284 299 IPR001611 GO:0005515
Rops11g00033 854 Pfam Leucine Rich repeat 376 392 IPR001611 GO:0005515
Rops11g00033 854 ProSiteProfiles Leucine-rich repeat profile. 212 234 IPR001611 GO:0005515
Rops11g00033 854 Gene3D Ribonuclease Inhibitor 30 179 IPR032675 -
Rops11g00033 854 FunFam Nuclear pore complex protein NUP107 29 180 - -
Rops11g00033 854 Gene3D Ribonuclease Inhibitor 279 428 IPR032675 -
Rops11g00033 854 ProSiteProfiles Leucine-rich repeat profile. 92 113 IPR001611 GO:0005515
Rops11g00033 854 FunFam Putative LRR receptor-like serine/threonine-protein kinase 509 623 - -
Rops11g00033 854 SUPERFAMILY L domain-like 50 419 - -
Rops11g00033 854 SUPERFAMILY Protein kinase-like (PK-like) 525 846 IPR011009 -
Rops11g00033 854 FunFam Calmodulin-binding receptor kinase CaMRLK 256 374 - -
Rops11g00033 854 PRINTS Leucine-rich repeat signature 93 106 - -
Rops11g00033 854 PRINTS Leucine-rich repeat signature 113 126 - -
Rops11g00033 854 ProSiteProfiles Protein kinase domain profile. 548 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00033 854 Gene3D Ribonuclease Inhibitor 180 278 IPR032675 -
Rops11g00033 854 Gene3D Transferase(Phosphotransferase) domain 1 624 853 - -
Rops11g00033 854 Pfam Protein tyrosine and serine/threonine kinase 552 844 IPR001245 GO:0004672|GO:0006468
Rops11g00033 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 230 849 - -
Rops11g00033 854 SMART LRR_typ_2 90 112 IPR003591 -
Rops11g00033 854 SMART LRR_typ_2 113 136 IPR003591 -
Rops11g00033 854 SMART LRR_typ_2 331 355 IPR003591 -
Rops11g00033 854 SMART LRR_typ_2 378 401 IPR003591 -
Rops11g00033 854 SMART LRR_typ_2 161 185 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00033 Rops-Chr11 322229 325611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00033 63 853 Receptor kinase-like Gene Family AT4G39400 34.663 5.49e-113 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Rops11g00033 PK_Tyr_Ser-Thr 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00033 - - gmx:100787157 1494.56