Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00026 ATGGGTGGTCAGAAGGAAAGCTTTTTGAGACTATCTTCATCCTCTGATGCTGGAGCTAAAAAATCTGGATTTGGTATTGATAAATTAAGCCATGGTGGTCATGGAAGAAGCACAACCTCTAGGTCTTTTAAAAGAGGAATGAGAAAGGGTTCTGAAGGACTGAAGTCAATTGGCCGATCGCTTGGATTGGGGGTATCTAGGGCAGTGTTTCCAGAGGATCTTAAAGTATCAGAAAAGAAGATATTTGATCCTCAGGACAAATTTTTGCTCTCATGGAATAAGCTTTTTGTTACCTCGTGCATTTTGGCCGTGTCTGTGGATCCACTGTTTTTTTATCTCCCTGTCATCAATGATCCATTACACTGTCTTGGCATAGACCGAAAGTTGGCAACGATAGTTACCACCCTAAGGACAGTAATTGATGCTTTCTATCTTATACACATGGCTCTCCAATTTCGTACTGCTTATATTGCTCCATCATCTCGTGTCTTTGGGCGGGGTGAGCTTGTGATAGATTCAGCACAGATAGCCAAGCGATACTTGCAGCGGTATTTCATCATCGATTTCCTATCTGTGTTGCCGATACCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAAGTTCAGATGTACTAGCAACAAAGCAGGCCTTGCTGTTCATTATCTTGCTTCAGTATGTTCCTAGATTTCTCCGAATGGTACCATTGACTTCAGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGCAGGTGCTGCATATTACTTGCTGTTATACATGCTTGCTAGTCATATAGTTGGTGCTTTTTGGTACTTGTTAGCTATTGAACGCAATGACTCATGCTGGCAGAAGGCTTGCAGTGACAATGGGTGCAATAAAGACTTCCTGTACTGTGGCAACCAGCACATGGAAGGTTATAGTGCTTGGCAGAATAGAAGTGAAGCTATCCTTAAGTCAAAATGCTCTGCAGATGTTAAGCCTCCTCCTTTTGATTATGGAATTTTCACACAGGCCTTGAAATCTGGTATCATTTCATCTAAAAAGTTCTTCTCCAAATACTGTTACTGTTTATGGTGGGGCCTCCAGAATTTGAGTACACTTGGCCAGGGACTTCAAACTAGCACCTTCCCTGGGGAGGTTATCTTTTCAATAGCACTAGCTATATCTGGCCTCATCCTCTTTGCGCTTCTAATTGGCAACATGCAGACATATCTACAGTCTCTTACCATTAGGCTTGAGGAAATGAGAGTAAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTCCCCCAAGAGCTTAGAGAGCGTGTGAGACGGTATGATCAATATAAGTGGTTGGCAACGCGAGGTGTAGATGAAGAAAGTTTGGTTCAGAGTCTTCCAACGGATCTTCGAAGAGATATTAAACGTCATCTCTGTTTGGCTTTAGTGAGGAGGGTTCCATTATTTGAGAGTATGGATGAGAGACTGCTTGATGCCATATGTGAGAGACTGAAGCCGTGTTTATTTACAGAAAGTACTTACATTGTTCGAGAAGGAGATCCTGTTGACGAGATGCTTTTCATCATACGTGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTTTTCAACCGCAGTTTTCTAAAAGAGGCTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCTCTGGACCCCAGATCTGGTTCTAATCTCCCATCTTCTACTCGAACAGTTAAGGCATTAACGGAAGTTGAGGCTTTTGCCTTAACTGCGGATGAGTTAAAATTTGTTGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTTCAACACACTTTCCGTTTTTACTCCCAACAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGATATTGTAAAAAGAAAATTATGAAGCTTCGTCAAAAGGAAGAAGAAACTGATGAGTCAGAAGGAACTCAAGACAATGCTGGTGGCAGTTCCTACAGCCTTGGTGCTGCCTTGTTAGCCTCAAAGTTTGCCGCACACACTCTTCGCGGTGTACATCGCAATCGAATTGCTAAGACTGCCAGGGAGTTAGTGAAACTTCAGAAACCCCCTGAGCCTGACTTTACTGCAGATGATGCAGACTAA 2151 0.4356 MGGQKESFLRLSSSSDAGAKKSGFGIDKLSHGGHGRSTTSRSFKRGMRKGSEGLKSIGRSLGLGVSRAVFPEDLKVSEKKIFDPQDKFLLSWNKLFVTSCILAVSVDPLFFYLPVINDPLHCLGIDRKLATIVTTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSAQIAKRYLQRYFIIDFLSVLPIPQIVVWRFLQRSKSSDVLATKQALLFIILLQYVPRFLRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDSCWQKACSDNGCNKDFLYCGNQHMEGYSAWQNRSEAILKSKCSADVKPPPFDYGIFTQALKSGIISSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTFPGEVIFSIALAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEESLVQSLPTDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEADFCGEELLTWALDPRSGSNLPSSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYCKKKIMKLRQKEEETDESEGTQDNAGGSSYSLGAALLASKFAAHTLRGVHRNRIAKTARELVKLQKPPEPDFTADDAD* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00026 716 CDD CAP_ED 488 619 IPR000595 -
Rops11g00026 716 FunFam Cyclic nucleotide-gated ion channel 1 486 604 - -
Rops11g00026 716 Gene3D Helix hairpin bin 416 479 - -
Rops11g00026 716 Pfam Cyclic nucleotide-binding domain 510 599 IPR000595 -
Rops11g00026 716 Gene3D - 95 413 - -
Rops11g00026 716 Pfam Ion transport protein 91 414 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops11g00026 716 FunFam Cyclic nucleotide-gated ion channel 1 415 479 - -
Rops11g00026 716 SUPERFAMILY Voltage-gated potassium channels 83 410 - -
Rops11g00026 716 Gene3D Jelly Rolls 486 606 IPR014710 -
Rops11g00026 716 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 73 710 - -
Rops11g00026 716 MobiDBLite consensus disorder prediction 1 48 - -
Rops11g00026 716 SUPERFAMILY cAMP-binding domain-like 417 608 IPR018490 -
Rops11g00026 716 ProSiteProfiles cAMP/cGMP binding motif profile. 488 572 IPR000595 -
Rops11g00026 716 SMART cnmp_10 488 619 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00026 Rops-Chr11 225335 232873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00026 1 713 Ion Channels AT5G57940 79.050 0.0 1165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00026 K05391 - gmx:100784309 1271.53