Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00016 ATGCAACTAGTAAACTATACACATGTGGTGAACGAATCTCACTTGCAATTCAACCAGTTATCTGATCTGCTTGCAAGTAGTGCACTCTTGGAAATGATGATCTTTCACCTTCCCTCTCCAGCGACAGCCCAGAAGTATCGTGTTGAGAATCTGTACAAAGGTCCCTTTGATGATCAATATGCTGCTGCCATCAGAAACTGTGATCCTGATGGACCTCTGATGCTTTATGTGTCAAAGATGATTCCTGCATCTGATAAGGGTAGGCTTTTTGCCTTTGGCCATGTCTTCGCTGGAAAGAGACAAGAAACTGTTGAGGATGTGCCTTGTGGTAACACATTTGCCATGGTTGGCTTGGATCAATTTATCACCAAGAATGCTACATTGACAAATGAGAAGGAAGTTTATGCCCACCCTATTCGAGCTATGAAGTTTTCTGTCTCACATGTTGTCTGTGTTGCTGTTCAATGTAAGGTTGCATCAGATCTTCCTAAGCTTGTTGCAGTTCTTAAACAGTTGGCCAAGTCAGATCCTATGGTTGTTTGTACTATTGAGGAGTCTGGAGAACATATTGTTGCTGGTGCAATAGAGCTTCATCTTGAGATTTGTTTGAATGACTTGCAGGAAGATTTTATGGGTGAAGCTGAGATTATTAAATCTGACCCTATTGTGTCATTCAGGGAGACTGTTCTGGAGAGATCATGCCGCACTGTGATGAGCAAGTCACCCAACAAGCACAACCGTTTGTACATGGAAGCAAGACCAATGGAGGATGGGCTAGCAGTGGCCATTGATGAGGGCAAGATTGGACCAAGGGATGACCAGCAAGAGTGTACTACTTGCAATAAGACCAACAATGAACCAGTCACGAATGAGCAATACCATTGCCCTGATGATGTCGAGCAATAA 906 0.4338 MQLVNYTHVVNESHLQFNQLSDLLASSALLEMMIFHLPSPATAQKYRVENLYKGPFDDQYAAAIRNCDPDGPLMLYVSKMIPASDKGRLFAFGHVFAGKRQETVEDVPCGNTFAMVGLDQFITKNATLTNEKEVYAHPIRAMKFSVSHVVCVAVQCKVASDLPKLVAVLKQLAKSDPMVVCTIEESGEHIVAGAIELHLEICLNDLQEDFMGEAEIIKSDPIVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEDGLAVAIDEGKIGPRDDQQECTTCNKTNNEPVTNEQYHCPDDVEQ* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00016 301 Gene3D - 231 294 IPR014721 -
Rops11g00016 301 Gene3D Translation factors 40 99 - -
Rops11g00016 301 Gene3D Translation factors 100 145 - -
Rops11g00016 301 SUPERFAMILY EF-G C-terminal domain-like 148 221 IPR035647 -
Rops11g00016 301 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 98 280 - -
Rops11g00016 301 MobiDBLite consensus disorder prediction 269 301 - -
Rops11g00016 301 CDD EF2_snRNP_III 149 220 - -
Rops11g00016 301 FunFam Translation elongation factor 2 147 224 - -
Rops11g00016 301 Pfam Elongation Factor G, domain III 149 215 IPR041095 -
Rops11g00016 301 Gene3D Elongation Factor G (Translational Gtpase), domain 3 148 224 - -
Rops11g00016 301 MobiDBLite consensus disorder prediction 274 291 - -
Rops11g00016 301 SUPERFAMILY Ribosomal protein S5 domain 2-like 223 284 IPR020568 -
Rops11g00016 301 SUPERFAMILY Translation proteins 39 138 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00016 Rops-Chr11 119361 120374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00016 23 273 Eukaryotic Initiation Factors Gene Family AT1G56070 77.003 3.81e-150 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00016 K03234 - gmx:100804251 431.409