Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g00015 ATGTCAGGCATTGTTTCAGACCCGGAAAAGGCTCTGAAGAGTTGGAATTCACCGGGTGTTCGTGTTTGTGATTGGTCAGGTGTGAGATGCAACAATGCAAGTGACAGGATCATAGAGCTTGATCTCAGTGGAAGGTCACTAGGAGGCACCATTTCCCCTGCTCTTGCCAACCTCTCTTCCTTGCAAATTCTTGATCTTTCAGGGAATCTTTTGGTGGGTCACATTCCAAAAGAACTAGGCCATCTAGTTCAACTTGGACAATTAAGTTTGTCTGGGAATTTTCTTGAAAGGGAGATTCCCTCCAGTTTTGGTTCACTTCACAACTTGTACTACCTTGACATAGGAAGCAATCAGCTTGAGGGAGAGATTCCTGCGTCACTTTTCTGCAACGGGACTTCATTGAGTTATGTAGACCTCTCTAATAATTCCTTGGGGGGACAAATCCCCTTGCACAATGAGTGTATAGTTAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACCAGCTTGCAGGCCAAGTTCCTTTAGCACTGTCAAACTCTACCAAGCTTAAATGGCTTGATTTGGGGTCAAATATGTTGAGTGGAGAGCTACCATATGAGATTGTGCGTAATTGGCCACAATTACAATTCCTCTACCTTTCATATAACAACTTTGTTAGCCATGATGGTAACACCAACCTTGAACCATTCTTTGCTTCCTTGATGAATCTATCTAACTTTCAAGAACTCGAATTGGCGGGAAACAATCTTGGTGGGAAGCTGCCTCATATTATTGGTGATCTTCCTACCGGCTTGCAACAACTTCACCTAGAAGAAAATCTCATATATGGCACCATACCTCCTCACATTGCCAACCTTGTCAATCTGACTTTCTTAAAATTGTCAAGTAACCTGATAAATGGAACAATCCCTCCCAGCCTCTACCAGATGAGTAGGCTAGAGAGAATTTATTTGTCAAATAATTCACTATTTGGTGAGATTCCTTCAACCCTTGGTGACATCAAGCATCTGGGTCTCGTAGATTTGTCAAGAAACAAGCTTTCTGGTTCAATACCAGATAGTTTTGCAAACCTGCCCCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCAGGAACAATCCCACCAAGTCTGGGAAAGTGTGTTAATTTGGAGATTTTAGACTTATCTCACAACAAGATCACAGGGCTGATTCCTGCAGAAGTTGCAGCCTTGACTAGCTTAAAACTATACTTGAATTTATCAGGCAATAACTTACATGGGCCTTTACCATTAGAACTCAGCAAAATGGACATGGTTCTAGCTATTGATGTATCCATGAATAATCTCTCAGGCAGAATCCCACCACAACTTGAAAATTGCATAGCATTGGAGTACCTCAACCTTTCTGGTAATTCCTTTGAAGGCCCTCTCCCTTATTCATTAGGCCAATTGCTCTATATTCGAGCACTTGACGTGTCTTCAAATCAATTGACTGGGGCAATACCGGAGTCCCTGCAGTTGTCTTCCTCTCTCGAGAAACTCAATTTCTCTTTCAACAAATTCACAGGGAATGTCTCAAACAATGGAGCATTTTCATCTCTGACCATTGACTCTTTCCTTGGAAATGATGGTCTCTGTGGCCCAATTAAAGGCATGCAACGTTGTCATAGGAAACACAGTTATCATTTAGTGTTCTTGTTAATTCCTACGTTACTATTTGGCACTCCTCTGCTGTGCATGTTTAGGTACTCAATGGTAAAAGTGAGAAAGCAATTTGCTATAGTTAGCAGAGGTGACTTGGAGGATGAAGAAGAGGAAACGAAAGAGCTCCAATACCCAAGGATTTCGTATAGACAATTTAGAGAAGCCACTGGAGGCTTCAGTGCTTCAAGCCTAATTGGTTCAGGCCAGTTTGGACAGGTCTACAAAGGAGTACTCCAAGATAATACAAGAGTAGCAGTGAAGGTATTAGATACAACAACAACAACAGCTGGTGAGATTTCAAGGAGCTTTAGAAGGGAATGTCAAATCCAGAAAAAGATCAGGCACAGAAATTTAATAAGGATCATCACAATTTGCAGCAAGCCAGGGTTTAAATCTCTTGTTCTTCCACTGATGCCAAATGGTAGCCTTGAGAGGCATCTATATCCAAGCCATGAGTTAAGCCAGAGGTTGGATGTGGTTCAGTTAGTGAGAATATGCAGTGATGTGGCTGAGGGAATGTCCTATCTGCACCATTACTCTCCTGTGAAAGTAGTGCATTGTGATCTTAAGCCGAGCAATATACTCCTTGATGATGATCTGACAGCTTTGGTTACTGATTTTGGAATTGCAAGGCTTCTAAAAGGTGATGAGAGTCTGTTCTCCAGTAACTCAGCATCTTTCAGTTCAACACAAGGCTTGTTATGTGGCTCTGTTGGCTATATAGCTCCCGAGTATGGAATGGGAAAACATGCTTCAACTGAGGGTGATGTTTATAGTTTTGGAGTAATTCTGTTAGAAATGGTGACGGGAAGACGCCCCACAGATGTCCTCACCCATGAAGGTTCTAGCTTGCATGAATGGGTTAAGAGACAATACTCACAGCCACACAAGCTTGAAATCATTGTTGAACAAGCATTGCAAAGGTGCTCTCCTTCTGGCTTGCCAAGCCATCATAACAAAGTTTGGAAAGATGTTATACTTGAACTCACTGAGTTGGGGCTACTTTGCACACAGCAGAATCCTTCAACAAGACCAAGCATGCTGGATGTAGCCCAAGAGATAGGGATGTTGAAGGATTACCTCACTAATTCTTTCAGCAGTGACGATAATTTAGTTCAAAAGTAA 2814 0.42 MSGIVSDPEKALKSWNSPGVRVCDWSGVRCNNASDRIIELDLSGRSLGGTISPALANLSSLQILDLSGNLLVGHIPKELGHLVQLGQLSLSGNFLEREIPSSFGSLHNLYYLDIGSNQLEGEIPASLFCNGTSLSYVDLSNNSLGGQIPLHNECIVKELRFLLLWSNQLAGQVPLALSNSTKLKWLDLGSNMLSGELPYEIVRNWPQLQFLYLSYNNFVSHDGNTNLEPFFASLMNLSNFQELELAGNNLGGKLPHIIGDLPTGLQQLHLEENLIYGTIPPHIANLVNLTFLKLSSNLINGTIPPSLYQMSRLERIYLSNNSLFGEIPSTLGDIKHLGLVDLSRNKLSGSIPDSFANLPQLRRLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKITGLIPAEVAALTSLKLYLNLSGNNLHGPLPLELSKMDMVLAIDVSMNNLSGRIPPQLENCIALEYLNLSGNSFEGPLPYSLGQLLYIRALDVSSNQLTGAIPESLQLSSSLEKLNFSFNKFTGNVSNNGAFSSLTIDSFLGNDGLCGPIKGMQRCHRKHSYHLVFLLIPTLLFGTPLLCMFRYSMVKVRKQFAIVSRGDLEDEEEETKELQYPRISYRQFREATGGFSASSLIGSGQFGQVYKGVLQDNTRVAVKVLDTTTTTAGEISRSFRRECQIQKKIRHRNLIRIITICSKPGFKSLVLPLMPNGSLERHLYPSHELSQRLDVVQLVRICSDVAEGMSYLHHYSPVKVVHCDLKPSNILLDDDLTALVTDFGIARLLKGDESLFSSNSASFSSTQGLLCGSVGYIAPEYGMGKHASTEGDVYSFGVILLEMVTGRRPTDVLTHEGSSLHEWVKRQYSQPHKLEIIVEQALQRCSPSGLPSHHNKVWKDVILELTELGLLCTQQNPSTRPSMLDVAQEIGMLKDYLTNSFSSDDNLVQK* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g00015 937 Gene3D Ribonuclease Inhibitor 2 154 IPR032675 -
Rops11g00015 937 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 341 917 - -
Rops11g00015 937 Pfam Leucine rich repeat 311 371 IPR001611 GO:0005515
Rops11g00015 937 ProSitePatterns Protein kinases ATP-binding region signature. 628 650 IPR017441 GO:0005524
Rops11g00015 937 ProSiteProfiles Leucine-rich repeat profile. 384 405 IPR001611 GO:0005515
Rops11g00015 937 Pfam Protein kinase domain 624 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00015 937 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 161 556 - -
Rops11g00015 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 747 759 IPR008271 GO:0004672|GO:0006468
Rops11g00015 937 SUPERFAMILY L domain-like 285 542 - -
Rops11g00015 937 CDD STKc_IRAK 628 917 - -
Rops11g00015 937 SMART LRR_typ_2 383 405 IPR003591 -
Rops11g00015 937 SMART LRR_typ_2 286 310 IPR003591 -
Rops11g00015 937 SMART LRR_typ_2 358 382 IPR003591 -
Rops11g00015 937 SMART LRR_typ_2 334 357 IPR003591 -
Rops11g00015 937 SMART LRR_typ_2 82 105 IPR003591 -
Rops11g00015 937 SMART LRR_typ_2 58 81 IPR003591 -
Rops11g00015 937 SMART LRR_typ_2 106 130 IPR003591 -
Rops11g00015 937 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 701 930 - -
Rops11g00015 937 FunFam Leucine-rich repeat family protein 1 153 - -
Rops11g00015 937 Pfam Leucine Rich Repeat 384 402 IPR001611 GO:0005515
Rops11g00015 937 Pfam Leucine Rich Repeat 458 477 IPR001611 GO:0005515
Rops11g00015 937 ProSiteProfiles Protein kinase domain profile. 622 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00015 937 SUPERFAMILY RNI-like 39 324 - -
Rops11g00015 937 Gene3D Ribonuclease Inhibitor 155 553 IPR032675 -
Rops11g00015 937 Pfam Leucine rich repeat N-terminal domain 3 31 IPR013210 -
Rops11g00015 937 SUPERFAMILY Protein kinase-like (PK-like) 602 916 IPR011009 -
Rops11g00015 937 SMART serkin_6 622 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g00015 937 Gene3D Transferase(Phosphotransferase) domain 1 701 935 - -
Rops11g00015 937 Gene3D Phosphorylase Kinase; domain 1 593 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g00015 Rops-Chr11 110404 113631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g00015 11 932 Receptor kinase-like Gene Family AT3G47110 35.468 1.84e-158 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Rops11g00015 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g00015 - - gmx:100792446 1513.05