Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02744 ATGGAATATGATGCTATGGCGGACAGTGCTGCATATGGGAGCTTCTCAGAAACAGATTTCATTGAAGAGCTCCTCGTAGAAGGCTGCTGGCTGGAAACAACCGTTGGATGTGGCTCCTACAACTGGGGCACGGACCCTTACCTGGCACTGACACCTTCAAAGTCGCAAATTTTCCAAGAAGAATCAGACCCCGAACCCGAAGGTTTTTTGGCGGGGAAGAGATGGTGGATAGAACCAAGGTCGAATCCGGGGCCATCTTCCCCTGTGAAAGAGAGATTAGTGGTTGCCGTCGGGTACTTGAAAGAATACACCAAGAACACTGATGTGCTGATACAGATATGGGTGCCCCTGCTGAGAGGGGTTCTCAATACACATGCTCAGGGTGAAGGTGAACGTCAGGATTACCCATGCGCCCTTGAGTATAACTATCCAAGAGCTTTTCACTTTCAAGGTCCCAACGTAAACATTCGCTTCTTTGGAAGCCACGAGTTTTATGAGCAGCAGTGCCAATACGATGTGCGTGGATCTTTGGCCCTTCCTATCTTTGAGCGAGGAACCGGCACATGTCTCGGTGTTGTCGAGATTGTCATGACCGACAACCCGGAGCTTGGGAATGTCTGCCATGCTCTCGAGGGTGTTGATTTTAGGAATTCTTGTGTCTTCATTCCACCAGCCGTTAAGGGTTTCAAGAAGTCGTACCAAGCTACAGTGAACGAGATTGTAGAGGTTTTGACGTGTGTGTGCAAGACGCACAACTTGCCTTTGGCTCTCACTTGGGCTCCCTGCATCCAACAGGGAAAGAGTGGATGTGGGCATTCAAATGATGAGAATTATGTATCCATTGTGGATGCTGCATGTTTTGTGGGGGATCTAGACATATTGGGATTCCAGGAAGCATGCTGTGAGTACCACCTTTTGGGAGGGCAAGGAATAGTTGGGACAGCATTAGCAACCACCCAACCTTGTTTTGCAAATGACATAACTGCCTTCAGCAAGGCTGAATATCCTCTTGCTCACTATGCAAACATGTTTGGGTTGCATGCTGCCGTGGCCATTCCCCTCAGGACCGGATCAGCTGATTTTGTCTTAGAATTTTTCCTGCCAAAGGATTGCCATGACAGCCAAGAGCAGAAGGAGATGCTCAACTCTTTATCTATGCTAGTACAGCAAGCTTGCCGGAGTTTGCATGTCATCACGGAAAAGGAAATCGAGGAGGAATTCACGTTGCCTGTCGGAGATGGTTCGAAAGAATCATCATCATGGATTGCACATATGATGGAGGCCCAGGCCCAACAGAAGGGGAAAGGTGTCTCCGTCTCCTTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAAGTAACAACCAACTTCGAACAAAGTTCAGGATGCAGGGGCAGTGTAGATGGTGGTGGCCGCCGTTCTTCATCTGGTGGCAGAAAACCAGGCGACAAGAGACGAACCAAGACAGAGAAGACTATCGGCTTGCCAGTTCTGAGGCAATACTTCGCAGGAAGCCTAAAAGACGCTGCCAAGAGCATTGGTGTATGTCCTACGACTCTAAAAAGGATATGCAGACAGCAGGGGATTACCAGGTGGCCTTCAAGGAAGATTAAGAAGGTAGGCCACTCTTTGAGGAAACTTCAACTTGTGATCGACTCAGTCCAGGGTGCCGAGGGTGCCATTCAAATTGGGTCCTTCTATACCATTTTTCCAGAGTTGAGCTCCAAAGATTTCTCTGCCAATGGCTTTTCTGAATCATCCAAGGTCAATGACCATAATTCTAAGCAAATGCATCCCTTTTCTGACAATGGCTTGTACAACCAAGGAGCTACTCCTTTAAAATCCCCACCGTCTTCTTGCAGTCAGACTCCAACCATCTCCTGTGCCACAGCAGGAAACCAACTTTCCACTGTCATCAACAATGGCGATATTCTATTGACAGATAGATTTCTCAAGAGAGCTCACAGTGAAGCAGAAGCATCTATCCAAGTCCAAGCCACTCAGCATCCTATTCATAGCCTTGAGGCTTTACCTCCCCTGCCCCAAACTTGTGACTGGAACACCGGTGCTTTTAGAGTCAAAGTTACTTTTGGGGATGAAAAAATCCGTTTTAGCTTGCAACAAAATTGGGGATTCAGATATTTGCAGCTGGAGATTGCAAGACGCTTCAATCTAAATGAGGTCACCAACATTCATCTCAAGTATTTGGATGATGCTCGGGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGAGGAGTGTAAAGCCATATATAGATCATCTCAGAGCCGCACAATTAGACTCTTTCTGTTTCAGGCTTCGCCTCTAAATCATGCTAATATACTTGGGGGCAGCAGCCCTTCCTAA 2367 0.474 MEYDAMADSAAYGSFSETDFIEELLVEGCWLETTVGCGSYNWGTDPYLALTPSKSQIFQEESDPEPEGFLAGKRWWIEPRSNPGPSSPVKERLVVAVGYLKEYTKNTDVLIQIWVPLLRGVLNTHAQGEGERQDYPCALEYNYPRAFHFQGPNVNIRFFGSHEFYEQQCQYDVRGSLALPIFERGTGTCLGVVEIVMTDNPELGNVCHALEGVDFRNSCVFIPPAVKGFKKSYQATVNEIVEVLTCVCKTHNLPLALTWAPCIQQGKSGCGHSNDENYVSIVDAACFVGDLDILGFQEACCEYHLLGGQGIVGTALATTQPCFANDITAFSKAEYPLAHYANMFGLHAAVAIPLRTGSADFVLEFFLPKDCHDSQEQKEMLNSLSMLVQQACRSLHVITEKEIEEEFTLPVGDGSKESSSWIAHMMEAQAQQKGKGVSVSLEYLQEPKQEFKVTTNFEQSSGCRGSVDGGGRRSSSGGRKPGDKRRTKTEKTIGLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQQGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTIFPELSSKDFSANGFSESSKVNDHNSKQMHPFSDNGLYNQGATPLKSPPSSCSQTPTISCATAGNQLSTVINNGDILLTDRFLKRAHSEAEASIQVQATQHPIHSLEALPPLPQTCDWNTGAFRVKVTFGDEKIRFSLQQNWGFRYLQLEIARRFNLNEVTNIHLKYLDDAREWVLLTCDADLEECKAIYRSSQSRTIRLFLFQASPLNHANILGGSSPS* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02744 788 ProSiteProfiles RWP-RK domain profile. 479 560 IPR003035 -
Rops10g02744 788 SMART PB1_new 690 773 IPR000270 GO:0005515
Rops10g02744 788 Pfam PB1 domain 691 772 IPR000270 GO:0005515
Rops10g02744 788 SUPERFAMILY CAD & PB1 domains 685 775 - -
Rops10g02744 788 MobiDBLite consensus disorder prediction 455 490 - -
Rops10g02744 788 PANTHER PROTEIN NLP8 70 773 IPR045012 GO:0003700
Rops10g02744 788 CDD PB1_NLP 691 772 IPR034891 -
Rops10g02744 788 Pfam RWP-RK domain 494 540 IPR003035 -
Rops10g02744 788 Gene3D - 689 775 - -
Rops10g02744 788 ProSiteProfiles PB1 domain profile. 690 773 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02744 Rops-Chr10 47402909 47405633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02744 9 785 NLP Transcription Factor Family AT4G35270 42.961 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Rops10g02744 PB1 1.6e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02744 - - pvu:PHAVU_009G115800g 961.059