Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02742 ATGGCCCACCGTCACCGACTGCCTCTGAGCAACATCAATCAGAATGTTATGGATAAGGAGAAGTCTTGTGTTGTCAACAAAGTAGATCTTTCCCGGAGATGTAGAGTGCAGACAGTTCAGCGCTACCCTGAAGAAACTAAGAACCAGAACCTGTTGGCTCCGACCCCCAGTTACGAGTCAGATTGTGCTGTCATAGATATTGATGAATACGAGGATGCCAGTGACAATGCAGTTCCCGTATTTGTAAAGCACACTGAAGCAATGCTAGACGAAATTGACAGAATAGAGGAAGTTGAAATGGAAGATGTCGAAGAACCTGTTATGGACATTGATGCCTGTGATAGGAACGATCCACTTGCTGTTGTTGAGTACATAGATGATATCTACCGTTTTTACAAGAAAACTGAGAATTCTGGTTGGGTCTCTCCAAATTACATGACTAGTCAATTTGACATTAACGAGAAGATGAGGGCCATTCTTATTGACTGGCTTATAGAGGTTCACCACAAATTTGAGCTTTTGGAGGAGACATTGTTCCTTACTGTCAATCTCATAGACAGGTTCTTGGAGCGTCAGGCAGTGATCAGAAAGAAGCTTCAGTTGGTTGGTGTAACAGCCATGCTAATAGCTTGTAAGTATGAGGAAGTATCAGTCCCCACCGTTGAGGATTTTATTCTGATAACAGACAAGGCATACACAAGAAATGAAGTTTTAAATATGGAGAAATTGATGGTGAACATCTTGAAATTCAACTTGTCTGTGCCTACTCCATACGTGTTCATGAGAAGATTTCTGAAGGCAGCTCATTCTGACAAAAAGCTGGAGCTCTTGTCCTTCTTCTTGATCGAGCTTTGCTTGGTGGAATGCCAAATGCTGAAGTTTTCACCATCTTTGCTAGCTGCTGCAGCCATTTACACAGCTCAGTGTAGTCTGTACCAGTTTAAGCAATGGACTAAGACCAGCGAGTGGTATACTGAATACTCCGAAGAGCAGCTTTTAGAATGCTCAAGGTTGATGGTTACTTTCCATCGGAATGCGGGATCAGGGAAACTTACTGGAGTATATAGGAAGTACAGTTCATGGAAGTATGGCTGTGCCGCAAGAATAGAACCAGCCCTTTTGTGA 1125 0.4284 MAHRHRLPLSNINQNVMDKEKSCVVNKVDLSRRCRVQTVQRYPEETKNQNLLAPTPSYESDCAVIDIDEYEDASDNAVPVFVKHTEAMLDEIDRIEEVEMEDVEEPVMDIDACDRNDPLAVVEYIDDIYRFYKKTENSGWVSPNYMTSQFDINEKMRAILIDWLIEVHHKFELLEETLFLTVNLIDRFLERQAVIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRNEVLNMEKLMVNILKFNLSVPTPYVFMRRFLKAAHSDKKLELLSFFLIELCLVECQMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTSEWYTEYSEEQLLECSRLMVTFHRNAGSGKLTGVYRKYSSWKYGCAARIEPALL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02742 374 SUPERFAMILY Cyclin-like 254 371 IPR036915 -
Rops10g02742 374 Gene3D - 127 367 - -
Rops10g02742 374 PANTHER CYCLINS 84 360 IPR039361 -
Rops10g02742 374 Pfam Cyclin, N-terminal domain 127 253 IPR006671 -
Rops10g02742 374 Pfam Cyclin, C-terminal domain 255 370 IPR004367 -
Rops10g02742 374 PIRSF Cyclin_A_B_D_E 3 374 IPR046965 GO:0016538|GO:0044772
Rops10g02742 374 ProSitePatterns Cyclins signature. 157 188 IPR006671 -
Rops10g02742 374 SMART cyclin_7 259 341 IPR013763 -
Rops10g02742 374 SMART cyclin_7 162 246 IPR013763 -
Rops10g02742 374 CDD CYCLIN_AtCycB-like_rpt2 255 371 - -
Rops10g02742 374 CDD CYCLIN_AtCycB-like_rpt1 108 250 - -
Rops10g02742 374 SUPERFAMILY Cyclin-like 116 252 IPR036915 -
Rops10g02742 374 Gene3D - 141 253 - -
Rops10g02742 374 FunFam G2/mitotic-specific cyclin-1 250 367 - -
Rops10g02742 374 SMART Cyclin_C_2 255 372 IPR004367 -
Rops10g02742 374 FunFam G2/mitotic-specific cyclin 141 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02742 Rops-Chr10 47329638 47332291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02742 6 372 Core Cell Cycle Gene Families AT1G20610 57.252 2.36e-155 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02742 K21777 - gmx:100812029 580.867