Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02731 ATGTTAATGCAAAGTTCTCTTCTTAGTTTAGTTGAAGCTGGTGTATGTTATGTATCTGATGATGGGAAAGATGTTCTATGTGACCGGATGCCTAGGGGTGGAACTTGTGAAAGAGTTGCTGATGATCCTTACAGCCCAAACTGTCTAAGTAGCTCTGGTCAGCCATCAACTGCCAGTATAATGACCGAAAATTCTGCACCTAATGTGGTATACAGGAGAAAAAAGCTACGCAAGAGCTCAATTGCCTCTCTTTTCAAGCTAGGGTCAACTGATATGCAGATAAGTGCCATTTGCCCTTCAGTCATAAGTTCCTCTGCGCATTTATCATCAGCTGGGGATCAATCAGCTAGTTTACAAGTCAAGCATGAAATTGAAATGGTTAAAGATCCTCCTGTGCCTTCTGTCTTAGTTGATGGAGTAGCCAAAGATACCTCACAGAACAACTTAGGTATTGACAGCGTAAATGATAGTTGCTCCTCTTCAAAGTCAAATGCGGAACTTGTTTCGGATTCCATGGAAACTGAACGGAATGAAACTGGTGAATGCTCCTCCTCTAGTGTAATTGTTATGGATGCCACAAGGGAAGAATTAACAGAAAAGGATTTCTGCATTAATATTTTACAAAGCCATGGACTGCTTAGAGGAGATTCTCCTGTAGATAATGTGGCTTCTGAGGAAGATGCTGTTACCACTGATAATAGCTGCTGTTCCAGGTCATGCAAAATATGTGGTCATTTGGACAGTTCATTGAACATGCTTTTATGTGATCATTGTGAAGATTCATATCATCCGTCATGCTACAATCCACGTTTGAAAAAAATACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAGAAAAGGCAGAAAATTCTTAAGGAGACGATTATTAGATCACCAGGTATCCACAGTGAAATGGGAAAATGTAAAACTGCCTCAGTTAAGGCTGAAATGAATCCCATACTGTTGATGTTGAGGGACACTGAGCCATATACAACTGGTGTGCGGATTGGTAAAGGTTTTCAAGCAGAAGTACCTGACTGGTCAGGCCCAATAAGAAGTGATGAAGATGACCTTCCTGAACCATTGGAAATCAGTCCTTCAGAATTTTATAGACTGCAGGAAGAGAATACGAGAAATCCAACTAGACTCAGTTCCATTGGTAATTGGCTTCAATGTCGGGAGGTTATAGATAGAGCAAATGGAACAATATGTGGAAAATGGCGCAGGGCTCCGCTTTTTGAAGTTCAAACTGATGACTGGGAGTGCTTCTGTGCTATTCACTGGGATCCATCTCATGCTGATTGTGCTGTTACTCAGGAGGTGGAAACAGATCAAGTTCTGAAGCAACTGAAGTATATAGAAATGCTGAGGCCGCGACTTGCTGGTAAACAGAGGAAATCAGATTGCACAAATAATGGTGATTGA 1428 0.4111 MLMQSSLLSLVEAGVCYVSDDGKDVLCDRMPRGGTCERVADDPYSPNCLSSSGQPSTASIMTENSAPNVVYRRKKLRKSSIASLFKLGSTDMQISAICPSVISSSAHLSSAGDQSASLQVKHEIEMVKDPPVPSVLVDGVAKDTSQNNLGIDSVNDSCSSSKSNAELVSDSMETERNETGECSSSSVIVMDATREELTEKDFCINILQSHGLLRGDSPVDNVASEEDAVTTDNSCCSRSCKICGHLDSSLNMLLCDHCEDSYHPSCYNPRLKKIPIDEWFCHSCLKKRQKILKETIIRSPGIHSEMGKCKTASVKAEMNPILLMLRDTEPYTTGVRIGKGFQAEVPDWSGPIRSDEDDLPEPLEISPSEFYRLQEENTRNPTRLSSIGNWLQCREVIDRANGTICGKWRRAPLFEVQTDDWECFCAIHWDPSHADCAVTQEVETDQVLKQLKYIEMLRPRLAGKQRKSDCTNNGD* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02731 475 SMART PHD_3 239 285 IPR001965 -
Rops10g02731 475 Pfam PHD-finger 240 286 IPR019787 -
Rops10g02731 475 Gene3D - 134 288 - -
Rops10g02731 475 FunFam RING/FYVE/PHD zinc finger superfamily protein 227 305 - -
Rops10g02731 475 ProSiteProfiles Zinc finger PHD-type profile. 237 287 IPR019787 -
Rops10g02731 475 SUPERFAMILY FYVE/PHD zinc finger 234 291 IPR011011 -
Rops10g02731 475 Pfam ELM2 domain 335 442 IPR000949 -
Rops10g02731 475 ProSitePatterns Zinc finger PHD-type signature. 240 284 IPR019786 -
Rops10g02731 475 Gene3D - 388 453 - -
Rops10g02731 475 FunFam uncharacterized protein LOC106759733 isoform X4 388 453 - -
Rops10g02731 475 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 226 294 IPR047171 GO:0006338
Rops10g02731 475 ProSiteProfiles Zinc finger CW-type profile. 384 444 IPR011124 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02731 240 285 C2H2 Transcription Factor Family AT3G01460 45.652 2.32e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops10g02731 ELM2 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02731 - - mtr:11430602 736.873