Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02719 ATGGAGATTGATCTTGAGCTGCCTATATGTGAGCACGAGAAGCTTGACATTGAATCTAATGAAAATGATGTTCCTGATACGGCATGTGATATACATGTTGAGGTGCAAAGCAGGAATCCTGCTTCAATGACTGAACACTACAAGGAAGTTTTGAATGACAATGCTTTCTGTTGCCAGGATCAGGTGGATTTGAATTCCAATCAGGTGGATGCTATTGATAAAAAACCCTTTAAAGAGCCACAGAATGGCTTGGAATTTGAATCAAAGGAGGCTGCCTATTCTTTCTACAGAGAATATGCTTGCTTAGTGGGATTTGGTATCACAATAAAAGCCAGTCGACGCTCAAAACAGTCTGGTAAATTCATTGATATTAAAATTGCTTGTTCCAGATTTGGAAGCAAGCGTGAGTCTGGCACAACTGTTAATCCACGATCATGTATAAAGACAGATTGCAAGGCTGGCATGCATATTAAGAAGAAGCTAGAAGGTAATTGGATCATATACAATTTTGTAAAAGAGCACAATCATGAGATCTGTCCAAATGATTTATTCAGGGGGCGGAGCAAACAAACAAGTAATATAGCTTGTCAGAAGAAGGGTATGCAATCGGCTCTAGATGAGGGAGACGTGCAGGCGATGGTTGAATACTTTGTGTCTATGCAGGGTGAGAATCCCAACTTCTTCTATGCAATAGACCTGGATCAGAACAGACATTTGAGAAGCGTATTTTGGGTTGACTCAAAGGGCAGACTTGATTATCAAAACTTCCATGATGTTGTGTTGATTGACACTTTTTACATAAAAAACAAATATAAAATTCCTTTTGTTCCTATTGTGGGAGTCAACCATCACTTCCAGTACATATTACTTGGATGTGCACTGGTTGGGGAGGAGACTGTTTCAGCTTTTATATGGTTAATGCAAACATGGCTCAAAGCAATGAGTAGCCTACCCCCAAAGGTGATTATCACAGACCAAGATAAATTCTTGAAAGAAGCTGTTGCAGAAGTGTTTCCAGATACACATCATTTTTTCTGTCTCTGGCATATTCTATGTAAAATCACCAAGAATTTGGGTTATATCATAAATCAAAATAATAACTTTATGGAAAAATTTAACAAATGCATCCTTCATTCCTGTTTGGATGAGCAGTTTGAAAAGAGATGGTGGAAACTGATCAATAGATTTGAACTAAAGGACAATGAATGGGTTCAATCATTGTATGAAGATCGTAAGAAGTGGGTGCCCACATTCATGCAGGATGTTTCTTTGGCTGGATTGTCAACAACTGTAAGGTCTGAAAGTACAACCTCATCCTTTGACAACTACATTTGTGTTGATTCTACCTTTAAGGAGTTTATTGAACAGTATAAAGTTTTCTCTACAGACAGTTTTAACATGGAGGCCAAAGCTGAATTTGAAACAAGACAAAAGCAATTTGCATTAAGATCTCTATCACCTTTTGAGAAACAGCTATCTAACATTTATACAGATGCTATATTTAGAAAAATCCAGTTGGAGATATTGGGAATGGTGTCTTGTTGTCTCCAGAAGGAAAAAGAAGACAGAACAAATGTAACATTTCTTGTCGATGATTTTGAGGTGCAGAAGAAATTTATTGTTTCTTGGAATGAAGCAGATTTGATTGTCTGTTGTTCATGTCGTTTATTTCAATATAAAGGTTTTCTATGTAGACACGCAATACTTGTCATTCAGATGTCTGGTATGACCAGCATTCCATCCCATTATATTTTGAAACGATGGACGAAAGATGCAAAGGCCAATCAATTTGCTGGTGACATAATGAGCAGGACTGCTAGTCGAGTGCAACGTTTTAATGACCTCTGTAGACGAGCTATTCTATTAAGTGAAATCGGGTCTTTATCTGTAGATTCTTACTGTATTGCATCTCAGGCATTGGAAGAAGTCTATAAACATTGTGTGAATGCAAACAATTCTGCTAGAAGCACTTTAGAACCCAAGAAGTTGGCTCTAAATGGTGTTTTTGATGTTGAAGAGAAGAATTATGGCTGCCGTAGGACAAATTCTAAGAAAAGGAAGTCATGTAATAAAAGGGAATGCTCTGATCCAGAAAGAATCAATATCAAGATGCTGGACGGCTTCCAAATAAGGGAACAGAGAATTTCGAGAGCACAAAACTTTGATAATTGTTACATTTCTCAACAGGACACGCAAACAGTGGACTTGGATTCTAGAGCTTCAACTCTTGATGGCTATTGCCGGGCACAACAGAATGTTCTTGGAGACGCTCAGCTGAACTCGGTTTCTGTCATGAAGGACAATTATTATAGCAGTCAACAGGCCATTCTAGGGCTGGGGCAAATGCATTCTGTGCCAAGTGGTGGTCCACATTATGGAATGCAGCACAGCATGCAAGGACTGCTTCAGGGACAGCTTAATTTCAGAACGCCAACAACGCAGGGGTGTTTTGACCTTCAACATAGTCTAGAAGATATGGAACAACCGCATGTTAGGGCCTCACAGTTCCTTGGCATTCCATCAAAGCAACTAGATGTTTGA 2541 0.3884 MEIDLELPICEHEKLDIESNENDVPDTACDIHVEVQSRNPASMTEHYKEVLNDNAFCCQDQVDLNSNQVDAIDKKPFKEPQNGLEFESKEAAYSFYREYACLVGFGITIKASRRSKQSGKFIDIKIACSRFGSKRESGTTVNPRSCIKTDCKAGMHIKKKLEGNWIIYNFVKEHNHEICPNDLFRGRSKQTSNIACQKKGMQSALDEGDVQAMVEYFVSMQGENPNFFYAIDLDQNRHLRSVFWVDSKGRLDYQNFHDVVLIDTFYIKNKYKIPFVPIVGVNHHFQYILLGCALVGEETVSAFIWLMQTWLKAMSSLPPKVIITDQDKFLKEAVAEVFPDTHHFFCLWHILCKITKNLGYIINQNNNFMEKFNKCILHSCLDEQFEKRWWKLINRFELKDNEWVQSLYEDRKKWVPTFMQDVSLAGLSTTVRSESTTSSFDNYICVDSTFKEFIEQYKVFSTDSFNMEAKAEFETRQKQFALRSLSPFEKQLSNIYTDAIFRKIQLEILGMVSCCLQKEKEDRTNVTFLVDDFEVQKKFIVSWNEADLIVCCSCRLFQYKGFLCRHAILVIQMSGMTSIPSHYILKRWTKDAKANQFAGDIMSRTASRVQRFNDLCRRAILLSEIGSLSVDSYCIASQALEEVYKHCVNANNSARSTLEPKKLALNGVFDVEEKNYGCRRTNSKKRKSCNKRECSDPERINIKMLDGFQIREQRISRAQNFDNCYISQQDTQTVDLDSRASTLDGYCRAQQNVLGDAQLNSVSVMKDNYYSSQQAILGLGQMHSVPSGGPHYGMQHSMQGLLQGQLNFRTPTTQGCFDLQHSLEDMEQPHVRASQFLGIPSKQLDV* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02719 846 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 65 648 IPR031052 GO:0006355
Rops10g02719 846 SMART 26again6 550 577 IPR006564 GO:0008270
Rops10g02719 846 Pfam SWIM zinc finger 551 573 IPR007527 GO:0008270
Rops10g02719 846 ProSiteProfiles Zinc finger SWIM-type profile. 537 575 IPR007527 GO:0008270
Rops10g02719 846 Pfam FAR1 DNA-binding domain 94 179 IPR004330 -
Rops10g02719 846 Pfam MULE transposase domain 259 351 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02719 Rops-Chr10 47055259 47059717 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops10g02719 MULE 4.7e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02719 - - gmx:100802811 1305.81