Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02718 ATGGTGGTTGGGCAAGCTCTTCCTTCTCCTTCATTTGCTCCCTCTCCAGTTTCCAACAACTTCCCCGGAAAAGCGGTGTTGCTGAGTCTCGGAGTGAGAGTCACACCCACACGCCTTGTCTCTTTCTCTGTAAGCCCCTCTGCCTCCATCGATCATGAACAAGATGCACCCACAACCGACAACAATGATTCTCCCACGAAACCATCATCAAGTTTCGGAAGACTTAAAGCCCAGCAAGTGAAAGCTCTCATCCACAGGACCAAGCAGCAAAGGCGCACTCTTGATGATGATAACAACACATCTCATGACTCTGATGATGATGATGACACCCATAAACCCAGTTCACGTTCTCCTTCTCATTTCAGAGGATGGGGTGATAAGGCTCCTAAGCCTCGACCACAAAGGGAACATAGAAAGTCATCATCATTGCAGGACACCAACTTTTTCAGTCTCAAGTCCTTTAAAGAAATAGGCTGCACTCAAAATGTCATCCAATCGCTGCAGAAGCAGTCTTTCAAGCGCCCTTCAAATGTTCAGGCCATGGCATTTGCTCCTGTTCTTGGTGGAAAGACTTGTGTCATAGCTGATCAAAGCGGTTCTGGAAAGACATTAGCTTATCTTGCACCAATAATTCAGCGTCTTAGACAAGAAGAACTAGAAGGACGTAGCAAATCCTCTTCACAAGCTCCTAGAGTGGTTATACTGGCGCCGACAGCCGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCAATGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACGGGTGGCTTTCGACAAAGAACTCAACTGGAAAATTTGCAGCAGGGTGTCGATGTCTTAATAGCCACGCCAGGCCGTTTTCTGTTCCTGATAAAGGAAGGCTGCTTGCAGTTTACACACCTAAGATGTGCTGTGTTGGATGAGATAGATATACTCTTTAGCGATGAGGACTTCGAAGTGGCTCTTCAGTGCTTGATTAATTCTTCACCAGTTGACACACAATATTTATTTGTGACTGCAACTTTACCCAAAAATGTCTACAGCAAACTGGTTGAAGTTTTTCCCGATTGTGAAATGATCATGGGGCCTGGTATGCATAGAATAAGCTCTCGCCTTGAAGAGATTCTAGTAGATTGCAGTGGAGAACATGGACAAGAAAAAACTCCAGATACTGCTTTTTTGAACAAGAAAGCTGCCCTTCTGCAGCTTACAGAAGAAAGTCCTGTCCCAAGAACTATTGTTTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAGAATGCATTAAAGCGTTTTGATAGAAAAGGAATTAGCATACAAGTTCTACCTTTCCATGCGGCCATGACACAAGAATCACGGCTTGCTAGTAGGGAAGAGTTTGCACGTTCTCCATCAAAAGAAGTCTCCCAGTTTATGGTTTGCACCGACAGAGCATCACGGGGAATTGACTTCACGGAAGTGGATCATGTGATACTGTTTGACTTCCCACGTGATCCAAGTGAATATGTGCGCCGTGTTGGAAGAACAGCAAGAGGGGCCAGTGGACAGGGCAAGGCATTTATCTTTGTGGTTGGGAAGCAAGTATCTCTTGCACGCAAAATAATGGAAAGAAATCGGAAGGGTCACCCACTCCATGATGTGCCTTCGGCTTATGAGATGATGAGGTAG 1680 0.4494 MVVGQALPSPSFAPSPVSNNFPGKAVLLSLGVRVTPTRLVSFSVSPSASIDHEQDAPTTDNNDSPTKPSSSFGRLKAQQVKALIHRTKQQRRTLDDDNNTSHDSDDDDDTHKPSSRSPSHFRGWGDKAPKPRPQREHRKSSSLQDTNFFSLKSFKEIGCTQNVIQSLQKQSFKRPSNVQAMAFAPVLGGKTCVIADQSGSGKTLAYLAPIIQRLRQEELEGRSKSSSQAPRVVILAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLFLIKEGCLQFTHLRCAVLDEIDILFSDEDFEVALQCLINSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMIMGPGMHRISSRLEEILVDCSGEHGQEKTPDTAFLNKKAALLQLTEESPVPRTIVFCNKIETCRKVENALKRFDRKGISIQVLPFHAAMTQESRLASREEFARSPSKEVSQFMVCTDRASRGIDFTEVDHVILFDFPRDPSEYVRRVGRTARGASGQGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAYEMMR* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02718 559 MobiDBLite consensus disorder prediction 45 76 - -
Rops10g02718 559 MobiDBLite consensus disorder prediction 88 116 - -
Rops10g02718 559 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 84 556 - -
Rops10g02718 559 Pfam DEAD/DEAH box helicase 177 350 IPR011545 GO:0003676|GO:0005524
Rops10g02718 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 528 IPR027417 -
Rops10g02718 559 SMART helicmild6 427 517 IPR001650 -
Rops10g02718 559 CDD SF2_C_DEAD 376 527 - -
Rops10g02718 559 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 559 IPR001650 -
Rops10g02718 559 Pfam Helicase conserved C-terminal domain 400 516 IPR001650 -
Rops10g02718 559 CDD DEADc 163 350 - -
Rops10g02718 559 Gene3D - 375 550 IPR027417 -
Rops10g02718 559 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 152 180 IPR014014 GO:0003724
Rops10g02718 559 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 183 364 IPR014001 -
Rops10g02718 559 MobiDBLite consensus disorder prediction 45 144 - -
Rops10g02718 559 SMART ultradead3 171 379 IPR014001 -
Rops10g02718 559 MobiDBLite consensus disorder prediction 123 142 - -
Rops10g02718 559 Gene3D - 123 364 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02718 Rops-Chr10 47040688 47052382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02718 151 538 Eukaryotic Initiation Factors Gene Family AT3G19760 26.546 1.48e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02718 K13179 - gmx:100780849 745.732