LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops10g02700	ATGTCAAACCACGAAGAAGACCTCGATCTCCTACTTTCCCTTCAGGATAAGGTTCCTGAAACCCCTCCTGCTTCTCCCTCCCCAGGTTACCTGACCGATTCCGACGATGAGTCAACCAAGCGAAGGGAGAAGCCTGATATGTCCGTTTTCAAAAATGCCGTTCAGGATTGCCTTCTCTACCAACCCCCTAACCCTAACCCTAAGACCAAACCTGTCACCAACGATGCCCACGTTGACAAGTTTTCAGGTTTGAGAATAAGGAACCAATTGTTAACCCCTGCTGAGCTTTCGGAATGCTTTTCAGACATCCGTTTTGTTCGTTTATCCGTTATCAAGAATTTGTTGATTGGGGATACTTTTTCTGGAAGTTGGGTGACTGTTGGAGTATTGACAGAGAAGGGGACTCAGAAGACAAGTTCCACGGGGAAGAGCTATTGTATATGGAAAATTGGGTGTTTGGATGAAAGTACTGTTTCTCTTTTCTTGTTTGGTGATGCTTATCAGAGGAACATGAATGAGAAGGCTGGAACTGTCTTTGCACTCTTTAATTGTGCTGTTCGCAAGGATACTGCGGGTAATGGTTTTTCTTTGAGTATATACTCCCCTAGTCAAATTTTGAAGATGGGCACCTCTGTTGATTATGGAGTTTGCAGAGGGAAAAGAACGGATGGGATGCCTTGTTCGATGGTCATAAATAAACGTCATGGGACATATTGTAAATATCATAAATCAAAAGCAGCAGACAAATATTCCACAATGCGAACTGAACTCAAGGGAGGAAACTTAAGGACAGCATTTAGGCCTAGGGATTATCTCAGGTCAGAAGGAATTTACTTAGTTGACCCTCTTGCTGACAAAACAAACTTGAAAAAGTCTCGGCCAGTGAAATTGTTGTCTGTAGATGGTCTCAGAAAGGCATTGGGCAATGCAGGAAAAGTAACAACAGCTACACACTCCCAAGGGATTAGATTCCTTTCCGAGGTTACAGGCAAGTTTGATCCACAAATGATGAATAAAGGACCAAAGACTCCAAATGAACAAAGCAATTGCACAGAGAAGAGTTACAAAAAAGATTCCAGGAAATCATCTTCTGTGAATATGGGATCCTCTGCAGTCAATAAAAATCAACAGTTAGATGTAAAAAGAATAAAAACAGATGGCCAAGTTTTGGTCGATAAAACCACAAATAGTACAGGGAAGATGATTGAATTAGATCTTTACAGTTCAGATGAAGACTTCTGA	1242	0.4163	MSNHEEDLDLLLSLQDKVPETPPASPSPGYLTDSDDESTKRREKPDMSVFKNAVQDCLLYQPPNPNPKTKPVTNDAHVDKFSGLRIRNQLLTPAELSECFSDIRFVRLSVIKNLLIGDTFSGSWVTVGVLTEKGTQKTSSTGKSYCIWKIGCLDESTVSLFLFGDAYQRNMNEKAGTVFALFNCAVRKDTAGNGFSLSIYSPSQILKMGTSVDYGVCRGKRTDGMPCSMVINKRHGTYCKYHKSKAADKYSTMRTELKGGNLRTAFRPRDYLRSEGIYLVDPLADKTNLKKSRPVKLLSVDGLRKALGNAGKVTTATHSQGIRFLSEVTGKFDPQMMNKGPKTPNEQSNCTEKSYKKDSRKSSSVNMGSSAVNKNQQLDVKRIKTDGQVLVDKTTNSTGKMIELDLYSSDEDF*	414

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops10g02700	413	MobiDBLite	consensus disorder prediction	361	378	-	-
	Rops10g02700	413	FunFam	DNA replication licensing factor mcm10	70	244	-	-
	Rops10g02700	413	PANTHER	PROTEIN MCM10 HOMOLOG	22	362	IPR040184	GO:0003690\|GO:0003697\|GO:0006270
	Rops10g02700	413	MobiDBLite	consensus disorder prediction	332	379	-	-
	Rops10g02700	413	MobiDBLite	consensus disorder prediction	1	46	-	-
	Rops10g02700	413	Gene3D	-	69	243	IPR012340	-
	Rops10g02700	413	Pfam	Primase zinc finger	209	254	IPR015408	GO:0005634\|GO:0006260

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops10g02700	1	412	Core DNA Replication Machinery Family	AT2G20980	55.609	2.55e-140	404

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops10g02700	K10736		-	gmx:100527758	597.816