Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02696 ATGGGAAGGTCACCTTGCTGTGAGAAAGCTCACACAAATAAAGGTGCATGGACCAAAGAAGAAGATGATCGTCTTATAGCATATATTCGAGCTCATGGTGAGGGATGTTGGCGTTCTCTCCCCAAAGCTGCTGGTCTTCTCCGGTGCGGCAAGAGTTGCCGTCTCCGGTGGATCAATTATCTCCGCCCTGACCTCAAAAGAGGCAATTTCACCGAAGAAGAAGATGAACTCATCATCAAACTCCATAGTCTCCTTGGCAACAAGTGGTCTCTAATAGCTGGAAGATTGCCTGGGAGAACAGACAATGAGATAAAGAATTATTGGAATACTCACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAATGACCCTGCTCACAATCAAGAACCAGCTCCCACCACTATATCTTTTGCTTCAACTGCTGTTTCTGCTAGACAAGAGGAAGACGACGACGAAGACAACAGTAAAGCAAATGTGTTTGTGGAGAATAAGGATTCTAAAGGGCCCACCTTAGAACGCTGCCCTGACTTGAACCTTGAGCTAACAATTAGTCCACCCCATCAGCCATTGAAGAGTATGGGGAGAAGCCTTTGCTTTGCTTGCAGTTTGGGTTTGCAGAATAGCAAGGATTGTAGCTGTGGGATTAATGGTAACATGGGCAACACTAGTGGTGGGAGCAGCACTGCTACTGGTTATGATTTCATGGGCTTGAAAACCAGTGTTTTGGATTACAGAAGCTTGGAAATGAAATTAAATTGGATTAATTAG 792 0.4508 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDPAHNQEPAPTTISFASTAVSARQEEDDDEDNSKANVFVENKDSKGPTLERCPDLNLELTISPPHQPLKSMGRSLCFACSLGLQNSKDCSCGINGNMGNTSGGSSTATGYDFMGLKTSVLDYRSLEMKLNWIN* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02696 263 FunFam MYB-related transcription factor 13 66 - -
Rops10g02696 263 CDD SANT 69 112 IPR001005 -
Rops10g02696 263 SMART sant 66 114 IPR001005 -
Rops10g02696 263 SMART sant 13 63 IPR001005 -
Rops10g02696 263 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 163 - -
Rops10g02696 263 CDD SANT 16 61 IPR001005 -
Rops10g02696 263 Gene3D - 68 139 - -
Rops10g02696 263 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops10g02696 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops10g02696 263 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops10g02696 263 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops10g02696 263 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops10g02696 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops10g02696 263 Gene3D - 14 66 - -
Rops10g02696 263 FunFam Myb transcription factor 68 137 - -
Rops10g02696 263 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02696 Rops-Chr10 46730112 46731411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02696 1 258 MYB Transcription Factor Family AT4G38620 62.191 9.52e-115 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops10g02696 Myb_DNA-binding 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02696 K09422 - pop:7494250 399.053