Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02682 ATGGGAAGCTTCTGGAGGATCGAGTGTGGAGAGGATGGGGTCATCGATGCGGAGGAGGAGGAGGAGCTTGACCTCGACGGTTGGGGAAGCTTCTGGAGGAGGAGGTCGGAGAGTGCTCGAAAGGTTGGGGAAGAGTCGGCGTCGAGCAAGACGGTGGGAACCGGAACCCTAAGGGAGACGGCGGAGGAGGCAAGCACCGACACACTTTTAGGTGAGCTGCTATTACAAGCTGCTTCTGTTTTGTGCTTGACAACTGTTAAGAATGGAGACAAATTGGAGTTCAGCAGCGTACTAAAAATTACCAAGGCTAACTTCAATGACAAGCTGAGATCTCGCCTTATGGGGTGGAATAACAAATTCCTTTCTTTTGAGGTCTTTCCTGTGGGGGGGTTTACGGAGAAGAGGAAAGTAGCCTGGGTGAGCTGGGAAAATGTCTACAAGCCAAAAGATAAAGGTGGTTTAGGTGTTAGGAGAGTGGATTGGTTCAATCTTACTTTGCTTGGCAAATGGAGATGGAGAATTATTAATCAGGAAGAGGCTCTATGGGTGAGGATTCTTATATTTAAATATGGCAGTCTACTTACTAATCAGTGGGGTAATTCCAATACGGTCAGGTCCTCCTTAGCTTCTCAGTGGTGGAGAGACATCTCTCATCTTGAGATAAGGATAAATGTTCCCCAAGGTTGGTTCAGTAATAGTATTAGTAAGAAATTGGGGGATGGAGGTTTGACAAGCTTCTGGAATGATATTTGGTTAGGTAATTGTAACTTAAAGTCCAGGTTCACTCGCTTATATTTCTTGTCAAATTTGAAGGAAGCATCGGTCAAGGAGATGAGAAGGTGGGATGGAGAATCCTGGAGATGGAACTTGCAGTGGCGTAAGCCTCTCTTTACTTGGGAGGAGAGTTCTCTGTGGGATTTGATGATATTACTCGGTCAGATGGTTCTCAACAAGGATGTAAGAGATTCTTGGTGCTGGTTGCTTGAGGTCTCTGGAATTTACTCTTCCAAATCGGGCTATTCAACTTTAGGTAAGGCCTTAGCCTCTGATGTAAATTCAGCAACTGTTTTAAGAAGCAATTTATGTAGTAGATTGTGGAAATCTTTCGCTCCTTCAAAGGTTAAGTTCTTCTGTTGGAGGTTGCTTCTAAATTCAGCAACTGTTTTAAGAAGCAATTTATGTAGTAGATTGTGGAAATCTTTCGCTCCTTCAAAGGTTAAGTTCTTCTGTTGGAGGTTGCTTCTAGATAGGTTGTCAACAAGGACAAACTTATGCAAGAGGAACATTATTTCTCTATCCCATAACTATTGCAGCTTTTGTAATGTTGTCGGTGAGTCTTCGTATCATTTGTTCTTTGCTTGCCCTTTTGTAGTTAAAATCTGGGTTGCTATGTTTGCTTGGGTGGGACAATATCCGATTTCCGATTCTCACGTAGTAGGTCACTGTCTGCATTTCGCTGGTTTAGTTCAGCAAAGACTGGTGAAAGGTTGGATTGTTATATGGATGTCAATGGTTTGGTGCCTGTGGAAATCCCGTAATGACTTCTCCTTCAAATAG 1557 0.4355 MGSFWRIECGEDGVIDAEEEEELDLDGWGSFWRRRSESARKVGEESASSKTVGTGTLRETAEEASTDTLLGELLLQAASVLCLTTVKNGDKLEFSSVLKITKANFNDKLRSRLMGWNNKFLSFEVFPVGGFTEKRKVAWVSWENVYKPKDKGGLGVRRVDWFNLTLLGKWRWRIINQEEALWVRILIFKYGSLLTNQWGNSNTVRSSLASQWWRDISHLEIRINVPQGWFSNSISKKLGDGGLTSFWNDIWLGNCNLKSRFTRLYFLSNLKEASVKEMRRWDGESWRWNLQWRKPLFTWEESSLWDLMILLGQMVLNKDVRDSWCWLLEVSGIYSSKSGYSTLGKALASDVNSATVLRSNLCSRLWKSFAPSKVKFFCWRLLLNSATVLRSNLCSRLWKSFAPSKVKFFCWRLLLDRLSTRTNLCKRNIISLSHNYCSFCNVVGESSYHLFFACPFVVKIWVAMFAWVGQYPISDSHVVGHCLHFAGLVQQRLVKGWIVIWMSMVWCLWKSRNDFSFK* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02682 518 Pfam zinc-binding in reverse transcriptase 392 461 IPR026960 -
Rops10g02682 518 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 118 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02682 Rops-Chr10 46441920 46452502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02682 70 108 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 67.500 2.61e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02682 - - tpra:123914512 234.572