Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02678 ATGGAGGGTGATGTGGGGCGTTGGTCATTGGAATTCCTTATTGGGAAGTCAAACACAAACAGTAACCTTCTCAAGAAATTGATTCGTAAAATCCCAGTTTCAGACAGCGATTCCCGCTTGAAGAAGACGATTCTCCTCAAAACCCTTCAAGAAGAGTTATCCACAGCCTCCATAAGAGAATCCATGCTTGAAACCCTGGAGGTTCTAGAAGAAGTCCTCCGTCGCGAGGGCTCTCCAATCACCGCCGCCATGAGCGCCGCCTATTGCGGCGTCGCAGTGGAGTGCACGCTCAAGTACCTGGAAGTGGAAGTGTCGCACCCTGCGTACCTCAAAGCCGTGGAGAGGATATGGCGTGGTAGGGTTCGGTATATGGAAAAAGGAAGCCTTTTGTTCTCTGAAGAATTGAACCGTTGGAGAAGTGACATTGAGGCTTCCCTTTCCGATTCGCGAGTCATGGAGAGGTTGGCCGCTACGGTGAATACCAGAAGGGATGCCATTAACAAGCTCAAGGTTTATTTGGCTGAAGCCTGGGCAAACATTGGTCCTTCTTTTCTTGAGTTAATTGCAGCGTCCACACGGAAACAGCAACAGGGAGGAGTGTCTTCAATAGAAATTGGGAAGGACAATCAGTTGCTTGAAGGCAAGTGTGCTGCTACTACTGGTGGTACTGAGGAAATGGTTCCATCAACAAGTGGTAGCAAAATTGACTCTGTGTCGAGTCATCTTGAATGTAGTTCTTTAGAGTTGCAAACCTTGGCCAAGGATGCTTTGCCCAATTCATTGCATATGTGTAACATTGGAAGATCTGAGTTGGCAAGTAAAGACATGAATCGGGAGGCACACATGGAAAGACAGAGTAGAGATGCAGATGTACCTGATCCACATGCTTGCCAGAGTATTGGTAATGATGAGGCTAATCTTAATGAGCCAAGTATTAATAATAATGAGGCTAATCTTAATGAGCCAACTACCGTCCACCAGAGTGATGTTCATCTTCCTAGCTTGATGGAACCAAATACAACTGCTCGTACTCATGAGTGGGATGATTCGATAGATGACTTGCAGGATGGAACATCCAATCATGCAAGTAGATTTCATTTACCTAGCCCAAAGAGGAAGAAACTTTCCCCATTGAAGAAGTATGAACCAGCAAACATTACAAACAGGAGAAAACCAAGAAAATGGAGTGAATTGGAAGAGAGGACTCTAAGGACTGCCGTAGACAAATTTGGCATAGGAAATTGGAAATTCATCCTCAATTCTCACAGAGATATATTTGAAAATAGAACTGAAGTTGATTTGAAGGACAAGTGGAGAAACATGACTCGGTTGCAACTTCCGAAAGGGCCTTGTAATGCGGATCCTGCCAAACTTATAAAAAAACTGAAGAGGTCAAGGAAACATGCTGAGATATGGGGTGGCCAGAGAGGCATGATGTACAATCAAAACTATCCCTTTAACAACCAGTTCCAGAACTTGCAAATTGATAACAGCAAAAGGGGAAATGACAACAAGTCTCAGAATCATACGGATCAAAAAGGTAATGGTGGTGGTAGTGGTCATGGTCAATTAGCACACTTCCAAAATATTAAAGGGCCTCAGGGTCTTAAGGTACCACCCAAAGAACACAAATCTGTCAAGTTCAATTTACCACAGGAAGAATTTGATGCTAATGATGTTGGTTCTGATGAATTTGATGATGATTATGATTAA 1713 0.4372 MEGDVGRWSLEFLIGKSNTNSNLLKKLIRKIPVSDSDSRLKKTILLKTLQEELSTASIRESMLETLEVLEEVLRREGSPITAAMSAAYCGVAVECTLKYLEVEVSHPAYLKAVERIWRGRVRYMEKGSLLFSEELNRWRSDIEASLSDSRVMERLAATVNTRRDAINKLKVYLAEAWANIGPSFLELIAASTRKQQQGGVSSIEIGKDNQLLEGKCAATTGGTEEMVPSTSGSKIDSVSSHLECSSLELQTLAKDALPNSLHMCNIGRSELASKDMNREAHMERQSRDADVPDPHACQSIGNDEANLNEPSINNNEANLNEPTTVHQSDVHLPSLMEPNTTARTHEWDDSIDDLQDGTSNHASRFHLPSPKRKKLSPLKKYEPANITNRRKPRKWSELEERTLRTAVDKFGIGNWKFILNSHRDIFENRTEVDLKDKWRNMTRLQLPKGPCNADPAKLIKKLKRSRKHAEIWGGQRGMMYNQNYPFNNQFQNLQIDNSKRGNDNKSQNHTDQKGNGGGSGHGQLAHFQNIKGPQGLKVPPKEHKSVKFNLPQEEFDANDVGSDEFDDDYD* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02678 570 MobiDBLite consensus disorder prediction 353 388 - -
Rops10g02678 570 PANTHER MYB TRANSCRIPTION FACTOR 4 443 - -
Rops10g02678 570 Gene3D - 384 446 - -
Rops10g02678 570 MobiDBLite consensus disorder prediction 277 320 - -
Rops10g02678 570 CDD SANT_TRF 393 443 - -
Rops10g02678 570 MobiDBLite consensus disorder prediction 277 291 - -
Rops10g02678 570 MobiDBLite consensus disorder prediction 301 320 - -
Rops10g02678 570 SMART sant 391 444 IPR001005 -
Rops10g02678 570 Pfam Myb-like DNA-binding domain 393 441 IPR001005 -
Rops10g02678 570 MobiDBLite consensus disorder prediction 496 570 - -
Rops10g02678 570 ProSiteProfiles Myb-like domain profile. 387 442 IPR001005 -
Rops10g02678 570 SUPERFAMILY Homeodomain-like 393 459 IPR009057 -
Rops10g02678 570 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 387 446 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02678 Rops-Chr10 46412990 46418398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02678 352 441 Single Myb Histone (SMH) Gene Family AT1G15720 41.111 9.10e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops10g02678 Myb_DNA-binding 5.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02678 - K11111 psat:127081272 429.869