Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02671 ATGGGGCTTCGCGACGACATCGTTTCTGCAAAGGCTGGTTGCATCTCCGCCAAACGTGTAAGGGGCTTTGTACTTTGGAGATCATGGTTTCCATTGATGGATCCTCAAGCTCCTCGATTTCCAACTCATTTCCTCCGCTTCCTCTGGCGATTCCAACAGAAGGAGGTTGCAGAGACCACCCTCTCCCTTCACAAATCTCAGTGTTTGAAGCTTGAGACAACATATAATAGTTATATCCCTAGACAAGCTTATTTGTTTCAGTTAGCAGGGAGAAGAGCTTATCAGTCCCATGGTATCGAATCAGTATACCAGTGGCAGGGAGAGGTTGCTGCACTTTTCCAGGACCATGCAGATCTGCTTGAGGAGTTTACACATTTTCTTCCTGATACTTCAGGAACAACCTCTACTCATTATGCTGCTGCTCGAAACTCTCTACTTCGTGATAGGAGCTCTGCAATGCCAGTAATGAGGCAAATGCATTATGACAAGAGAGAATGGACCATAGCTTCACATGGTGATCGTGACCTCGGTGTTGACCATCCTGATCCAGAACTTGACAGAGGTTTGATGAGGGCTGATAAGGAGCAGAGAAGGCGTGGTGAGAAGGAAAAGGACCGTAGAGAAGAAAGAGACAGGAGAGAACGGGAAAGGGATGACAGGGATTATGATCATGATGGTAGTCGGGAGCATTTATCCCACAAGCGAAAATATGGTCGTAGGGCTGAAGATTCAGGTGTTGAGCCATTGGAGGATGCAGATGAAAATTTTGGTATGTGCCCCATCTCCTCTGCTTATGAGGATAAAAGTTCTTTGAAAAGTGATCAAGTGCTTGCTTTCCTTGAAAAAGTGAAGGAGAAATTACGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCCTACATATCTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCCTTGCATGGACTTACATTTTCCTCTTCATCTTACGGTCCAAAAATCATCGTTATTTATTCATCAGAGTCCTTGTGGAATGAAGAACATGGACTGAAACCAATAAAGGTAGAGGACAGGGATCGAGATCGTGATAGGGATGATGGGATGACAGAAAGGGATCGTGAATGCCGAGAAAGAGACAAATCTACTGCAATTGCCAACAAGGATGTTCCAGTTCCGAAGATGTCTCTATATGCTGGCAAGGATAACCAGAGAACTGAACTTGGTGCAGAAGTGTTGAATGATCACTGGGTTTCTGTCACTTCAGGAAGTGAGGATTATTCCTTTAAACACATGCGTAAAAATCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGAGATGTGATTTCAGTTAGCTCTTATGGGGAAGATGAACTCATGAGTCTCATTCAAACGTAA 1389 0.4399 MGLRDDIVSAKAGCISAKRVRGFVLWRSWFPLMDPQAPRFPTHFLRFLWRFQQKEVAETTLSLHKSQCLKLETTYNSYIPRQAYLFQLAGRRAYQSHGIESVYQWQGEVAALFQDHADLLEEFTHFLPDTSGTTSTHYAAARNSLLRDRSSAMPVMRQMHYDKREWTIASHGDRDLGVDHPDPELDRGLMRADKEQRRRGEKEKDRREERDRRERERDDRDYDHDGSREHLSHKRKYGRRAEDSGVEPLEDADENFGMCPISSAYEDKSSLKSDQVLAFLEKVKEKLRNPEDYQEFLKCLHIYSREIITRQELQSLHGLTFSSSSYGPKIIVIYSSESLWNEEHGLKPIKVEDRDRDRDRDDGMTERDRECRERDKSTAIANKDVPVPKMSLYAGKDNQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRDVISVSSYGEDELMSLIQT* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02671 462 Coils Coil 192 212 - -
Rops10g02671 462 Gene3D Paired amphipathic helix 267 324 IPR036600 GO:0006355
Rops10g02671 462 SMART hdac_interact2seq4b 376 462 IPR013194 -
Rops10g02671 462 MobiDBLite consensus disorder prediction 172 246 - -
Rops10g02671 462 SUPERFAMILY PAH2 domain 270 315 IPR036600 GO:0006355
Rops10g02671 462 SUPERFAMILY PAH2 domain 98 129 IPR036600 GO:0006355
Rops10g02671 462 Gene3D Paired amphipathic helix 39 131 IPR036600 GO:0006355
Rops10g02671 462 Pfam Sin3 family co-repressor 398 443 IPR013194 -
Rops10g02671 462 MobiDBLite consensus disorder prediction 351 375 - -
Rops10g02671 462 PANTHER SIN3B-RELATED 98 447 IPR039774 GO:0003714
Rops10g02671 462 Pfam Paired amphipathic helix repeat 84 127 IPR003822 GO:0006355
Rops10g02671 462 MobiDBLite consensus disorder prediction 172 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02671 Rops-Chr10 46239838 46246685 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops10g02671 Sin3_corepress 1.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02671 K11644 - gmx:100781798 406.371