Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02664 ATGGGATGGACCACTAAAAAACAGGACCTCTCACTCCGGCCACCGCCTAGGACCTCCACTCCAGCCACCGTCTCTCTCTCCATCTCCTTCCAAGGCTCCCTCAATGGCAGTGGTGTTACAATACCGGAAGATGTTGCCGACGAAGTGGAAGAAGCCGCCACCGTTTTAAATGACTGGTCCGTCCTCCAGCGACCTAGTTCCTCAGATCTCGTCGTCCTCGATTCTGTTAACAATGTTTTCTACACCGTACAATTCCCCATATCCCAAGTTTCAGAAAGTGATTTTGCGAGGTTTTCTGGAAATGGGTCTCCAGATTGCTATGACCCGTTGGATCCAAATGGGAACATTTCCATAACCTTTGACATTTACCAACGTACAGAAAATGGATATCTGGCAAGGGTGACTCTTAAAAACTATTATCAATATCGACATGTAGATAAACCTGGATGGAAACTAGGATGGAGATGGGCTAACGATGAAGTGATTTGGTCAATGAGTGGTGCCCTTGTAACTGATCGAGGGAATTGCTCATCTTACAGTGGCTCTCAGATGCCACATTCTTGCAAGAAAGATCCCATCATAGTTGATCTTGCTCCAGATGTTTCGCAAAACAGATTAGAGCATTGTTGTCGTGGTGGCCTCCTCTCTGCCTGGACCATCAACCCTTTGAATTCGTTCTCTTCATTTGAACTTGAAGTGCGCAATTTGGGGGAAGAAAACCCACTTGGACAAGCACCTACTAATATTACATTGATGGCCCCAGGTCCTGGTTACACTTGTAGCCCATTTCTAGATACGGATCCCTCAGTGTCCTCAGATTTTGGGGGACTAAGACAGGTTCCCGTTCTCAGAACTTGGAAGTCAACATGTACTTACTCCAGTTTCTTAGCAAATACATCACCAGTATGCTGTGTTTCCCTCTCAACATTTTACAATCCCACAATCACATCATGCCGTAATTGCAGTTGTGGATGCAGAGAAGCAGATAAAAGTACATTGTCTTGCATAAGGCCAGGTGATCCCTTATCACGATTTAACGAGGACAACATAATTGAATGCACTGACCACATGTGCCCAATTCGAATCCATTGGCATTTCAAGAACAACTACATGGATCATTGGAGGGTGAAGCTTACAATTTCTAACTATAACTATAAAAGAAACTACTCAAACTGGAATGTACTGGTTCAGCATCCTGGTTTCAGCCAAAAAGCAACAACTTACAGCTTCAACAGCACTAAACTTCCGACCGTTGGGCTCCAAGATGGGGTTTCACTCTTTTGGGGTATAGATTTTTACAACATTGAGCTATTGCATTCTGATAAGGATAGACTGGGTCTTGTGACAACAGAAATACTCTTGGAAAAAGATCCAAATTCTTTCACATTAAGTAACGGATGGGCATTCCCGAGAAGAATATATTTCAATGGTGAGAATTGTGAAATGCCTTTACCTGACACATTCCCTATGTTACCAAATGGTAGCTCCAGTTTGAGACCTACTTATTGTGGTTTCAATCTATTTTTAATTTCTTTGTTTCTTGCTATAACACTCCTTTGGTTTTGA 1566 0.4304 MGWTTKKQDLSLRPPPRTSTPATVSLSISFQGSLNGSGVTIPEDVADEVEEAATVLNDWSVLQRPSSSDLVVLDSVNNVFYTVQFPISQVSESDFARFSGNGSPDCYDPLDPNGNISITFDIYQRTENGYLARVTLKNYYQYRHVDKPGWKLGWRWANDEVIWSMSGALVTDRGNCSSYSGSQMPHSCKKDPIIVDLAPDVSQNRLEHCCRGGLLSAWTINPLNSFSSFELEVRNLGEENPLGQAPTNITLMAPGPGYTCSPFLDTDPSVSSDFGGLRQVPVLRTWKSTCTYSSFLANTSPVCCVSLSTFYNPTITSCRNCSCGCREADKSTLSCIRPGDPLSRFNEDNIIECTDHMCPIRIHWHFKNNYMDHWRVKLTISNYNYKRNYSNWNVLVQHPGFSQKATTYSFNSTKLPTVGLQDGVSLFWGIDFYNIELLHSDKDRLGLVTTEILLEKDPNSFTLSNGWAFPRRIYFNGENCEMPLPDTFPMLPNGSSSLRPTYCGFNLFLISLFLAITLLWF* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02664 521 Pfam COBRA-like protein 130 293 IPR006918 GO:0010215|GO:0016020
Rops10g02664 521 PANTHER PROTEIN COBRA 105 498 IPR006918 GO:0010215|GO:0016020
Rops10g02664 521 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g02664 521 PIRSF COBRA 78 520 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02664 Rops-Chr10 46097620 46107442 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02664 105 519 COBRA Gene Family AT3G29810 47.630 1.13e-137 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02664 - - ccaj:109801855 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02664 10 46097620 46107442 Rops10g02664 10 46097620 46107442 ECH