Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02647 ATGGACGAGGAAGAGTCTCAGCAAGGAGCCTCGGGAGTGGCTCAACAAACCCCAGAGCAACTAGTTGCGAGGTCCATAGCTCCTGTAAAGAAGGACTTCCTTCGTCCTGCTCCTGTTCGAGATTCCTCTCCAAACGACGACGTTTCCATCGCCAATGATAAGAAACCCCCTGTTGTAGTGAAGGAGAAGAAATCTAAGCGCCAACTCAAACGCGAACGTCGTCAGGAACAAAAGTCAGCACGAAACCTTTGTCCTCAACTAGCGAAGACAGGTGATGTTAGTTCGTGTCCTTATAAAGATAAGTGTCGATTCAGCCATGATTTAGAAGTCTTCAAGGCACAGAAACCAGCTGATTTGGAGGGAGAATGCCCTTTCTTTAAATCTGAAGACTCTTGCCCTTATGGGTTGGCATGTAGATTTTCAAGTACTCATGGAGAAAATGCTTTGCCTTCTGCTGCCAATCTGAATGGTCTGAAGAAAAGTTCCGAGGTTAATGGATTGAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGAGTTTCCCCAAGGCAGATGCCAAACTCAAGTCTCTTGGCCTCTCGGGACTCTCTAAGTCAAAAAGGAATGACTTGGAAAATAAAGATGGTGGTGACAATGGTTCAAATAAATGCGATCAGTCTGATGACAACGGCTCTTGTGTGGTTACCTCTGACACAGGTTCTAAGGTAGAATGCTCTGAAGAAGTTATAAAAGATGATGACTTTGATGGAAAATTAGAATCTGATGTACTTTGCCCCCAGAAGAGAAGAAAAACTGGAGAAAATAATGAACCTGGGGAGACAGAAAGTGAAGATGTGAGTGTTACTGAGAAAATTGTTGATAGAAGCTGTGTAAGATCTGAACAAGAAGCAGGGACTGATGCTGTAAGCCCCGAAACTGATCTAAGCCTGAAGTTGCACTCACGTGAAAAAAAGCCTATTGATTTCGGTGAGAAGTTATATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCTATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGTCATTCATCTGAAGACTTATTTGGCGTACAAATCTGTGGGGCATATCCTGATACTGTGGCACGAACAGTTGAATTAATAGAACAGGAATGTACCATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTAACAAAACCAATGCGGATGAAAAGTATTGTAGAAGTAGCTTCAGGCACAGTGGATAAACCAATAACTATCAAGGTACGGACAGCTTATTTTGAAGGGAAGAATCGCATTGATTCTCTGATAGCAGACCTTGGCTCTTGGGGAGCTAGTGCAGTGACAATACATGGTAGGTCACGTCAACAGCGCTATAGCAAGCTTGCTGACTGGGACTACATATACCAATGTGCCAGGAAGGCCCCTAATACTTTGCAAGTAGTGGGGAATGGAGATGTTTTTTCATTTGAAGACTGGAACAACCACAGAACTGATTGCCCTGAACTTGCTACACGCATGATTGCTCGTGGTGCACTGATTAAACCTTGGATATTTACGGAGATCAAAGAACAGAGACATTGGGACATCAGTTCTGGTGAGCGACTAAATATTCTCAAGGATTTTGTGCATTTTGGCCTGGAACACTGGGGTTCTGACACTAAAGGGGTAGAGACAACCAGGCGGTTCTTGTTGGAATGGCTTGGCTACACTTGTAGGTACATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGAATAAACTGGCGTCCACCATCTTATTATGGGCGTGATGAGCTTGAGACACTGATGGCCTCAGACTCTGCAGCTGACTGGATACGAATATCAGAGATGTTGCTTGGCAAGGTTCCAGATGGCTTTACATTCGCGCCAAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTAA 2037 0.4359 MDEEESQQGASGVAQQTPEQLVARSIAPVKKDFLRPAPVRDSSPNDDVSIANDKKPPVVVKEKKSKRQLKRERRQEQKSARNLCPQLAKTGDVSSCPYKDKCRFSHDLEVFKAQKPADLEGECPFFKSEDSCPYGLACRFSSTHGENALPSAANLNGLKKSSEVNGLSKDVQKLLWKNKMSFPKADAKLKSLGLSGLSKSKRNDLENKDGGDNGSNKCDQSDDNGSCVVTSDTGSKVECSEEVIKDDDFDGKLESDVLCPQKRRKTGENNEPGETESEDVSVTEKIVDRSCVRSEQEAGTDAVSPETDLSLKLHSREKKPIDFGEKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVDKPITIKVRTAYFEGKNRIDSLIADLGSWGASAVTIHGRSRQQRYSKLADWDYIYQCARKAPNTLQVVGNGDVFSFEDWNNHRTDCPELATRMIARGALIKPWIFTEIKEQRHWDISSGERLNILKDFVHFGLEHWGSDTKGVETTRRFLLEWLGYTCRYIPVGLLDVVPQRINWRPPSYYGRDELETLMASDSAADWIRISEMLLGKVPDGFTFAPKHKSNAYDRAENG* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02647 678 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 322 564 - -
Rops10g02647 678 Pfam Dihydrouridine synthase (Dus) 329 563 IPR035587 -
Rops10g02647 678 ProSiteProfiles Zinc finger C3H1-type profile. 122 147 IPR000571 GO:0046872
Rops10g02647 678 CDD DUS_like_FMN 326 561 IPR035587 -
Rops10g02647 678 Gene3D Aldolase class I 322 564 IPR013785 -
Rops10g02647 678 ProSitePatterns Uncharacterized protein family UPF0034 signature. 410 428 IPR018517 GO:0008033|GO:0017150|GO:0050660
Rops10g02647 678 ProSiteProfiles Zinc finger C3H1-type profile. 78 109 IPR000571 GO:0046872
Rops10g02647 678 MobiDBLite consensus disorder prediction 198 232 - -
Rops10g02647 678 MobiDBLite consensus disorder prediction 1 83 - -
Rops10g02647 678 Gene3D - 73 154 - -
Rops10g02647 678 Coils Coil 59 79 - -
Rops10g02647 678 MobiDBLite consensus disorder prediction 217 232 - -
Rops10g02647 678 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 16 672 - -
Rops10g02647 678 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 74 154 - -
Rops10g02647 678 SUPERFAMILY FMN-linked oxidoreductases 326 639 - -
Rops10g02647 678 MobiDBLite consensus disorder prediction 8 22 - -
Rops10g02647 678 MobiDBLite consensus disorder prediction 260 282 - -
Rops10g02647 678 MobiDBLite consensus disorder prediction 201 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02647 Rops-Chr10 45890758 45895905 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops10g02647 Dus 1.4e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02647 K05544 - gmx:100783494 1159.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02647 10 45890758 45895905 Rops10g02647 10 45890758 45895905 ECH