Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02643 ATGCGAACGCTTTGCGACGTTTGTGAGAGTGCTGCCGCTATTCTCTTCTGTGCCGCTGACGAAGCTGCTCTCTGCCCTGCATGCGATGATAAGGTCCATAAGTGTAACAAGCTTGCTAATAGACACGTTCGTGTTGGGCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGTAGTTCGCTGTGTCTGCAATGTGATATGATTGTCCATGTTGGTGGTAAAAGAACCCATGAAAGATATCTTCTCTTGAGGCAGAGAGTTGAGTTTCCAGGCGACAAATCTAGCCGATTGGAAGAACAAGGGCTGCAACAACTGGAACAAAATGAATCAAGGAAGGACCAAAGTCAGTCACCGATTCTAAAAACACGAGATGGTCAGCAGAATTATAGACCACAGTGGTTAAATGGGCCAGCACTGAACAACCAGGAACAGGGTATGAACGTTTTAGGTTACAACAATCATGAATCTGCAAGTGTGGTGGAACCCTTCAAACAGGAGGCCGAGAAATAA 552 0.4583 MRTLCDVCESAAAILFCAADEAALCPACDDKVHKCNKLANRHVRVGLADPTDVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVEFPGDKSSRLEEQGLQQLEQNESRKDQSQSPILKTRDGQQNYRPQWLNGPALNNQEQGMNVLGYNNHESASVVEPFKQEAEK* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02643 183 SMART bboxneu5 1 47 IPR000315 GO:0008270
Rops10g02643 183 SMART bboxneu5 51 96 IPR000315 GO:0008270
Rops10g02643 183 MobiDBLite consensus disorder prediction 164 183 - -
Rops10g02643 183 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 131 - -
Rops10g02643 183 FunFam B-box zinc finger protein 19 2 92 - -
Rops10g02643 183 MobiDBLite consensus disorder prediction 118 155 - -
Rops10g02643 183 CDD Bbox1_BBX-like 56 96 - -
Rops10g02643 183 Gene3D Classic Zinc Finger 2 96 - -
Rops10g02643 183 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops10g02643 183 CDD Bbox1_BBX-like 4 47 - -
Rops10g02643 183 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Rops10g02643 183 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Rops10g02643 183 Pfam B-box zinc finger 53 92 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02643 Rops-Chr10 45768555 45770750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02643 1 169 C2C2-CO-like Transcription Factor Family AT2G21320 63.529 6.69e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Rops10g02643 zf-B_box 2.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02643 - - gmx:100527369 284.263