Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02639 ATGCAAAATTTCCCCGACGCCGGAGGAGGAGACGTGCCGGTGGATGCACCGGTCTCTGGCGGAGGCCTTGAGGAGGTTGTGATCGCGGGAACGAGTTCGGGGAATAAAGAGGAGGGCACGGTTGTTGGTGACGTGGCAGGAGCTACGGCGACGGAAGATGAGGGTGGCGAAATGCAAGTGATGGACGTATCGGGTGATGCCTCTGCCTCAGCCTCTTACGGGGTTGGGGTGGAAGATGAGATTGTTGAGGAGAAGGGGAATGAAGGAACAGGTGTTGATGACGTGGCGTTGGAGACAGAGAAGGTGGAAGAGGAAGCCGACGTGGCAATTGAGGAGGAAGAAATTAGGGATGAGGAGACAAATGAAGCTGCTTTGATGGAAGAACAAGAAGAAGAAGAAGGAGAAGGAGAAGAACAACAGGAACAGGAAGAAGATGAAGATGAAGAAGCTGATGCTGGTGTCGCTGAAGATAGAGAGGTTGCTGAGGAGATAGAGGTGGTGGAGGAGCAGAGTGCTGGTGTGAGTGGTGGGAAGAGGAAGCGTGGGGGTGGGAAGAGCCCCAAGTCTGCAGGGAGAGTTCCATCAAGGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTCGACGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCTAAGGCTTACCATCCTTCATGTGTTAATCGTGATGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCATATTATATGTGCTATACATGTACATTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTGTGTGTTAGAGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGCAGGGAAACAACATGGGACAAGTAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGCTGTCTCTAACATTTGATGAACTTGCTCAAGCTAAAAATCCTTGGAAGGGATCTGATATGCTTCCTTCTAAAGAGGAATCACCAGATGAACTTTATGATGCCAGTAATGATAGAGGATCAGATTCAGATAGCAACAATGAGAACATAGATACAAGTCGTTCTAAAAGAAGAAAGGCCAAGAAACGGGCAAACTCCCATTCCAAAGAGGGGAATTCATATAGTGCAGTGCCAGTGCTTGGTGCCGATGGACCATCTGTAGATGAAAGCTCTGATTGGGCTTCAAAGGAGCTTTTGGAGTTTGTTATGCACATGGGAAATGGAGAGAAATCTGTTTTGTCTCAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAAATCATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAGCCCAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTGTAAAAGAGGATTCTCAGGCTGAAGATCTACAGGGGAGTGTTGTTGATACTGAAGTTAGTCATATGGAAGGTGATGGTAATGCTGATTCATATCAGAAAGCTGGAAAAGATAAGAGACGTAAAACTCGTAAAAAGGGTGATGAGAGAGGACTTAAATCTAATGTTGATGATTATGCAGCCATTGATAATCATAATATTAATTTAATTTATCTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATACAGAAAAGTTTCATGATAAAGTTGTTGGTTCTTTTGTGAGGATAAGAATTTCCAGTAGTGGTCAGAAGCAAGACTTGTACAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAACAGAACCATATAAAGTTGGGAAGAGGATGACAGATATCATGCTAGAAATCTTAAATTTAAACAAAACAGAGATTGTATCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGCGGTCTCATAAATCGACTGACTGTGGGTGACATTCAGGACAAAGCATTGGCACTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTAAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGTAGATTGGAGGAAATTCCTGAAATACATGTGGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGAAGATGAAATGGAGGGTAAAAGACAAGAAAACTACATGAGACCTAGAGGCTCTACTGCCATTGGAAGGAGGGGGAGAGAAATTGCTTCTCCTAGAAGTGGTTCTATTTCAAGTGATTCTTGGAGTGGAATAAGGAATTATGCTAATGTGAATCATGAACTCAGCAGAAATTTGTCTCACAAGGGATATTCAATCAAAAGTGATGATATTTCTAATGCTAGTGAGGTATTAACTGATGCTCAATTGCACCAGGGAAGAGATAGGGAATCACAATTATCTAATAGCTGGGAGAGGCAAAAGCCATCTTCAAGCTTCGAAAGTGGGACTAAAAATACCCAGCCATTGGTAACATCTGAGTCTTTTTCTACTGCTATGTTAGAAGCTTCTGCAGCACCATCTTCTGCTGGAATAGCTCCACCAGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTATCAGGATCCATCCGGAAAAGTTCAGGGGCCATTTTCCATTGTTCAGCTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGAATCTATACTCTTAACAGATGCCTTGGCAGGGAAATTTTCTGAGGAACCACCAATGGTGGATAAAACTCTTCCCAAAGCTCAAGCAGTGCATGAATTACATCACTCATCCCCATTTTCTAGGAAGTCTCATTTGGCTGCACAACAGGGTATAGAAGGTCAAGTTGGAGGAAGGCCAACATTTGATCAAAATAGTGGATCTTGGAATTCACATGGAACTCTGGGTTCTCCGGGACAAACCGCAGGAGGAAGTTGGAAATCTAAAGATAATATGAATTCTTTAGCAAGTAGAACTTCTCCATTGGCAGTTGAGGTCCCCAAGAATCCTGCAAATGGATGGGGTTCTCATGCTGGAGTTAGAAATGAATCAACAAATCTTCCTTCACCTACTCCTCAGACTACTCCTTCAGGTGGGATGAAGGGGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGGCGGGACCTCTCTTAGGAAATTCATTCCCTGGTGGTCCTGGAGGTTTACAGCCCTCTGTGGTGGTGCTCCCAGAGAATGTTGTGCAAAATGATGAAAATGGTTTAAGTTCACAACCTGGCATGACAGCAGCTTCTAAATCAGAGAAGGGTATGATATTGAGCTCTACAGATACTACTCATGTACATCCTCAAGCAACAGCAGTGGCATCTGTCCTGACTTCAGGTGTTAACATTAAAACAGCAGGTGCAAATATGCAAATTCAGGCTATGAGCTATAACTCTCATGCTGAAGCTCAAGGGTGGGGTTCTGCTGTGGTTCCAAAGCCAGAACTACAGGCCCAGGGAGATACTCCATCTCAAAGGATAGAACCAATTAATCCTGCTACTATGCCTGCCCAGCCAGCTTCCCATGGCCACTGGGGCGATGCTTCGTCTGTCCGGCACCCTGCCTCATTTGGCACTGGAAATCCAAGTGGGAGTTTACCCACGCCTGGCTTTCTGAGCATGACTACACCAGAGCCTTGGAGACCACCAACTTCAAATGGTCAATCGAACATTACAGCTCCAGCTCCTCCCAATATTCCTTGGGGCATGGGAATGCCAGGAAATCACAATATTGGCTGGGGTGGGATAGTTGCTGCCAATATGAACGTAAACTGGATAACTTCGCAGGTGTCAACACCTGGAAATGCAAATCCAGGATGGGCTGCTCCTAGTCAAGGGCCACCTCCAGTCAATGCAGCTGGCTGGGTTGCACCTGGTCAAGGACGTCCACATGCAAATGCAAATGCAAATCCAAATCCAGGTTGGATTGTGCCTGGTCAGGGGATAGCACCTGGAAGTGCCAATCCTGGTTGGGCTGCACCAGCTGGGAATCCAGGCATGCGGGGAAGTGAGCAAAGTCATAACGGAGACAGATACCCCAACCAAGGGGATCGTGGTACCCATGGTGGAGATTCTGGTTATGGAGGTAAATCTTGGAACAGGCAGTCATCATTTGGCAGCGGAGGCAGAGGGGGTTCTTCCAGGCCACCTGCTGGGGGACAAAGAGGAGTCTGCAGGTTTCACGAGAGTGGCCATTGCAGGAAGGGGGCTTCCTGTGATTATATACACAATTAA 4443 0.4501 MQNFPDAGGGDVPVDAPVSGGGLEEVVIAGTSSGNKEEGTVVGDVAGATATEDEGGEMQVMDVSGDASASASYGVGVEDEIVEEKGNEGTGVDDVALETEKVEEEADVAIEEEEIRDEETNEAALMEEQEEEEGEGEEQQEQEEDEDEEADAGVAEDREVAEEIEVVEEQSAGVSGGKRKRGGGKSPKSAGRVPSRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNEQGNNMGQVDFDDKNSWEYLFKDYYIDLKEKLSLTFDELAQAKNPWKGSDMLPSKEESPDELYDASNDRGSDSDSNNENIDTSRSKRRKAKKRANSHSKEGNSYSAVPVLGADGPSVDESSDWASKELLEFVMHMGNGEKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLVKEDSQAEDLQGSVVDTEVSHMEGDGNADSYQKAGKDKRRKTRKKGDERGLKSNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISSSGQKQDLYRLVQVVGTCKATEPYKVGKRMTDIMLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALALQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMEGKRQENYMRPRGSTAIGRRGREIASPRSGSISSDSWSGIRNYANVNHELSRNLSHKGYSIKSDDISNASEVLTDAQLHQGRDRESQLSNSWERQKPSSSFESGTKNTQPLVTSESFSTAMLEASAAPSSAGIAPPAVKINETEKMWHYQDPSGKVQGPFSIVQLRKWSNTGYFPADLRIWRTTEKQDESILLTDALAGKFSEEPPMVDKTLPKAQAVHELHHSSPFSRKSHLAAQQGIEGQVGGRPTFDQNSGSWNSHGTLGSPGQTAGGSWKSKDNMNSLASRTSPLAVEVPKNPANGWGSHAGVRNESTNLPSPTPQTTPSGGMKGQAFENKWSPTPVQLAGPLLGNSFPGGPGGLQPSVVVLPENVVQNDENGLSSQPGMTAASKSEKGMILSSTDTTHVHPQATAVASVLTSGVNIKTAGANMQIQAMSYNSHAEAQGWGSAVVPKPELQAQGDTPSQRIEPINPATMPAQPASHGHWGDASSVRHPASFGTGNPSGSLPTPGFLSMTTPEPWRPPTSNGQSNITAPAPPNIPWGMGMPGNHNIGWGGIVAANMNVNWITSQVSTPGNANPGWAAPSQGPPPVNAAGWVAPGQGRPHANANANPNPGWIVPGQGIAPGSANPGWAAPAGNPGMRGSEQSHNGDRYPNQGDRGTHGGDSGYGGKSWNRQSSFGSGGRGGSSRPPAGGQRGVCRFHESGHCRKGASCDYIHN* 1481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02639 1480 Pfam GYF domain 912 954 IPR003169 GO:0005515
Rops10g02639 1480 SMART gyf_5 910 965 IPR003169 GO:0005515
Rops10g02639 1480 CDD SWIB-MDM2_like 424 499 - -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 520 549 - -
Rops10g02639 1480 ProSiteProfiles SWIB/MDM2 domain profile. 418 501 IPR003121 -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 1070 1092 - -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 735 754 - -
Rops10g02639 1480 SUPERFAMILY SWIB/MDM2 domain 424 500 IPR036885 -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 856 878 - -
Rops10g02639 1480 ProSiteProfiles Plus3 domain profile. 560 693 IPR004343 GO:0003677
Rops10g02639 1480 MobiDBLite consensus disorder prediction 1 23 - -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 1257 1298 - -
Rops10g02639 1480 CDD PHD5_NSD 203 248 - -
Rops10g02639 1480 SMART rtf1 560 670 IPR004343 GO:0003677
Rops10g02639 1480 CDD GYF 909 964 IPR003169 GO:0005515
Rops10g02639 1480 ProSiteProfiles Zinc finger C3H1-type profile. 1455 1480 IPR000571 GO:0046872
Rops10g02639 1480 MobiDBLite consensus disorder prediction 82 194 - -
Rops10g02639 1480 FunFam Zinc finger CCCH domain-containing protein 19 911 968 - -
Rops10g02639 1480 Gene3D - 562 690 IPR036128 GO:0003677
Rops10g02639 1480 PANTHER UNCHARACTERIZED 86 1479 - -
Rops10g02639 1480 ProSiteProfiles Zinc finger PHD-type profile. 201 267 IPR019787 -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 1007 1038 - -
Rops10g02639 1480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 295 IPR013083 -
Rops10g02639 1480 Gene3D SWIB/MDM2 domain 415 509 IPR036885 -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 348 412 - -
Rops10g02639 1480 Pfam Plus-3 domain 565 668 IPR004343 GO:0003677
Rops10g02639 1480 Gene3D - 910 969 IPR035445 -
Rops10g02639 1480 FunFam Zinc finger CCCH domain-containing protein 19 412 506 - -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 840 878 - -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 1011 1038 - -
Rops10g02639 1480 Coils Coil 101 146 - -
Rops10g02639 1480 FunFam Zinc finger CCCH domain-containing protein 19 193 293 - -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 354 369 - -
Rops10g02639 1480 SUPERFAMILY GYF domain 900 962 IPR035445 -
Rops10g02639 1480 CDD Bbox1 249 275 - -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 735 803 - -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 1432 1446 - -
Rops10g02639 1480 FunFam Zinc finger CCCH domain-containing protein 19 561 690 - -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 82 97 - -
Rops10g02639 1480 SMART PHD_3 203 249 IPR001965 -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 1063 1092 - -
Rops10g02639 1480 ProSiteProfiles GYF domain profile. 909 963 IPR003169 GO:0005515
Rops10g02639 1480 MobiDBLite consensus disorder prediction 1382 1459 - -
Rops10g02639 1480 SUPERFAMILY FYVE/PHD zinc finger 200 254 IPR011011 -
Rops10g02639 1480 MobiDBLite consensus disorder prediction 98 166 - -
Rops10g02639 1480 Pfam SWIB/MDM2 domain 426 499 IPR003121 -
Rops10g02639 1480 ProSitePatterns Zinc finger PHD-type signature. 204 264 IPR019786 -
Rops10g02639 1480 SUPERFAMILY Plus3-like 561 689 IPR036128 GO:0003677
Rops10g02639 1480 MobiDBLite consensus disorder prediction 1219 1298 - -
Rops10g02639 1480 SMART swib_2 439 504 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02639 Rops-Chr10 45704160 45714974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02639 201 288 PHD Transcription Factor Family AT5G36670 32.000 6.37e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Rops10g02639 Plus-3 4.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02639 - - aprc:113865790 2145.93