Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops10g02639 | ATGCAAAATTTCCCCGACGCCGGAGGAGGAGACGTGCCGGTGGATGCACCGGTCTCTGGCGGAGGCCTTGAGGAGGTTGTGATCGCGGGAACGAGTTCGGGGAATAAAGAGGAGGGCACGGTTGTTGGTGACGTGGCAGGAGCTACGGCGACGGAAGATGAGGGTGGCGAAATGCAAGTGATGGACGTATCGGGTGATGCCTCTGCCTCAGCCTCTTACGGGGTTGGGGTGGAAGATGAGATTGTTGAGGAGAAGGGGAATGAAGGAACAGGTGTTGATGACGTGGCGTTGGAGACAGAGAAGGTGGAAGAGGAAGCCGACGTGGCAATTGAGGAGGAAGAAATTAGGGATGAGGAGACAAATGAAGCTGCTTTGATGGAAGAACAAGAAGAAGAAGAAGGAGAAGGAGAAGAACAACAGGAACAGGAAGAAGATGAAGATGAAGAAGCTGATGCTGGTGTCGCTGAAGATAGAGAGGTTGCTGAGGAGATAGAGGTGGTGGAGGAGCAGAGTGCTGGTGTGAGTGGTGGGAAGAGGAAGCGTGGGGGTGGGAAGAGCCCCAAGTCTGCAGGGAGAGTTCCATCAAGGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTCGACGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCTAAGGCTTACCATCCTTCATGTGTTAATCGTGATGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCATATTATATGTGCTATACATGTACATTCTCTTTGTGCAAGGGATGCATCAAAGATGCTGTTATCTTGTGTGTTAGAGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGCAGGGAAACAACATGGGACAAGTAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAGCTGTCTCTAACATTTGATGAACTTGCTCAAGCTAAAAATCCTTGGAAGGGATCTGATATGCTTCCTTCTAAAGAGGAATCACCAGATGAACTTTATGATGCCAGTAATGATAGAGGATCAGATTCAGATAGCAACAATGAGAACATAGATACAAGTCGTTCTAAAAGAAGAAAGGCCAAGAAACGGGCAAACTCCCATTCCAAAGAGGGGAATTCATATAGTGCAGTGCCAGTGCTTGGTGCCGATGGACCATCTGTAGATGAAAGCTCTGATTGGGCTTCAAAGGAGCTTTTGGAGTTTGTTATGCACATGGGAAATGGAGAGAAATCTGTTTTGTCTCAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAAATCATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAGCCCAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTGTAAAAGAGGATTCTCAGGCTGAAGATCTACAGGGGAGTGTTGTTGATACTGAAGTTAGTCATATGGAAGGTGATGGTAATGCTGATTCATATCAGAAAGCTGGAAAAGATAAGAGACGTAAAACTCGTAAAAAGGGTGATGAGAGAGGACTTAAATCTAATGTTGATGATTATGCAGCCATTGATAATCATAATATTAATTTAATTTATCTAAGACGTAATTTGGTGGAAGATCTACTTGAAGATACAGAAAAGTTTCATGATAAAGTTGTTGGTTCTTTTGTGAGGATAAGAATTTCCAGTAGTGGTCAGAAGCAAGACTTGTACAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAACAGAACCATATAAAGTTGGGAAGAGGATGACAGATATCATGCTAGAAATCTTAAATTTAAACAAAACAGAGATTGTATCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGCGGTCTCATAAATCGACTGACTGTGGGTGACATTCAGGACAAAGCATTGGCACTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTAAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGTAGATTGGAGGAAATTCCTGAAATACATGTGGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGAAGATGAAATGGAGGGTAAAAGACAAGAAAACTACATGAGACCTAGAGGCTCTACTGCCATTGGAAGGAGGGGGAGAGAAATTGCTTCTCCTAGAAGTGGTTCTATTTCAAGTGATTCTTGGAGTGGAATAAGGAATTATGCTAATGTGAATCATGAACTCAGCAGAAATTTGTCTCACAAGGGATATTCAATCAAAAGTGATGATATTTCTAATGCTAGTGAGGTATTAACTGATGCTCAATTGCACCAGGGAAGAGATAGGGAATCACAATTATCTAATAGCTGGGAGAGGCAAAAGCCATCTTCAAGCTTCGAAAGTGGGACTAAAAATACCCAGCCATTGGTAACATCTGAGTCTTTTTCTACTGCTATGTTAGAAGCTTCTGCAGCACCATCTTCTGCTGGAATAGCTCCACCAGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTATCAGGATCCATCCGGAAAAGTTCAGGGGCCATTTTCCATTGTTCAGCTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGAATCTATACTCTTAACAGATGCCTTGGCAGGGAAATTTTCTGAGGAACCACCAATGGTGGATAAAACTCTTCCCAAAGCTCAAGCAGTGCATGAATTACATCACTCATCCCCATTTTCTAGGAAGTCTCATTTGGCTGCACAACAGGGTATAGAAGGTCAAGTTGGAGGAAGGCCAACATTTGATCAAAATAGTGGATCTTGGAATTCACATGGAACTCTGGGTTCTCCGGGACAAACCGCAGGAGGAAGTTGGAAATCTAAAGATAATATGAATTCTTTAGCAAGTAGAACTTCTCCATTGGCAGTTGAGGTCCCCAAGAATCCTGCAAATGGATGGGGTTCTCATGCTGGAGTTAGAAATGAATCAACAAATCTTCCTTCACCTACTCCTCAGACTACTCCTTCAGGTGGGATGAAGGGGCAGGCTTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGGCGGGACCTCTCTTAGGAAATTCATTCCCTGGTGGTCCTGGAGGTTTACAGCCCTCTGTGGTGGTGCTCCCAGAGAATGTTGTGCAAAATGATGAAAATGGTTTAAGTTCACAACCTGGCATGACAGCAGCTTCTAAATCAGAGAAGGGTATGATATTGAGCTCTACAGATACTACTCATGTACATCCTCAAGCAACAGCAGTGGCATCTGTCCTGACTTCAGGTGTTAACATTAAAACAGCAGGTGCAAATATGCAAATTCAGGCTATGAGCTATAACTCTCATGCTGAAGCTCAAGGGTGGGGTTCTGCTGTGGTTCCAAAGCCAGAACTACAGGCCCAGGGAGATACTCCATCTCAAAGGATAGAACCAATTAATCCTGCTACTATGCCTGCCCAGCCAGCTTCCCATGGCCACTGGGGCGATGCTTCGTCTGTCCGGCACCCTGCCTCATTTGGCACTGGAAATCCAAGTGGGAGTTTACCCACGCCTGGCTTTCTGAGCATGACTACACCAGAGCCTTGGAGACCACCAACTTCAAATGGTCAATCGAACATTACAGCTCCAGCTCCTCCCAATATTCCTTGGGGCATGGGAATGCCAGGAAATCACAATATTGGCTGGGGTGGGATAGTTGCTGCCAATATGAACGTAAACTGGATAACTTCGCAGGTGTCAACACCTGGAAATGCAAATCCAGGATGGGCTGCTCCTAGTCAAGGGCCACCTCCAGTCAATGCAGCTGGCTGGGTTGCACCTGGTCAAGGACGTCCACATGCAAATGCAAATGCAAATCCAAATCCAGGTTGGATTGTGCCTGGTCAGGGGATAGCACCTGGAAGTGCCAATCCTGGTTGGGCTGCACCAGCTGGGAATCCAGGCATGCGGGGAAGTGAGCAAAGTCATAACGGAGACAGATACCCCAACCAAGGGGATCGTGGTACCCATGGTGGAGATTCTGGTTATGGAGGTAAATCTTGGAACAGGCAGTCATCATTTGGCAGCGGAGGCAGAGGGGGTTCTTCCAGGCCACCTGCTGGGGGACAAAGAGGAGTCTGCAGGTTTCACGAGAGTGGCCATTGCAGGAAGGGGGCTTCCTGTGATTATATACACAATTAA | 4443 | 0.4501 | MQNFPDAGGGDVPVDAPVSGGGLEEVVIAGTSSGNKEEGTVVGDVAGATATEDEGGEMQVMDVSGDASASASYGVGVEDEIVEEKGNEGTGVDDVALETEKVEEEADVAIEEEEIRDEETNEAALMEEQEEEEGEGEEQQEQEEDEDEEADAGVAEDREVAEEIEVVEEQSAGVSGGKRKRGGGKSPKSAGRVPSRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNEQGNNMGQVDFDDKNSWEYLFKDYYIDLKEKLSLTFDELAQAKNPWKGSDMLPSKEESPDELYDASNDRGSDSDSNNENIDTSRSKRRKAKKRANSHSKEGNSYSAVPVLGADGPSVDESSDWASKELLEFVMHMGNGEKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLVKEDSQAEDLQGSVVDTEVSHMEGDGNADSYQKAGKDKRRKTRKKGDERGLKSNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKVVGSFVRIRISSSGQKQDLYRLVQVVGTCKATEPYKVGKRMTDIMLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALALQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMEGKRQENYMRPRGSTAIGRRGREIASPRSGSISSDSWSGIRNYANVNHELSRNLSHKGYSIKSDDISNASEVLTDAQLHQGRDRESQLSNSWERQKPSSSFESGTKNTQPLVTSESFSTAMLEASAAPSSAGIAPPAVKINETEKMWHYQDPSGKVQGPFSIVQLRKWSNTGYFPADLRIWRTTEKQDESILLTDALAGKFSEEPPMVDKTLPKAQAVHELHHSSPFSRKSHLAAQQGIEGQVGGRPTFDQNSGSWNSHGTLGSPGQTAGGSWKSKDNMNSLASRTSPLAVEVPKNPANGWGSHAGVRNESTNLPSPTPQTTPSGGMKGQAFENKWSPTPVQLAGPLLGNSFPGGPGGLQPSVVVLPENVVQNDENGLSSQPGMTAASKSEKGMILSSTDTTHVHPQATAVASVLTSGVNIKTAGANMQIQAMSYNSHAEAQGWGSAVVPKPELQAQGDTPSQRIEPINPATMPAQPASHGHWGDASSVRHPASFGTGNPSGSLPTPGFLSMTTPEPWRPPTSNGQSNITAPAPPNIPWGMGMPGNHNIGWGGIVAANMNVNWITSQVSTPGNANPGWAAPSQGPPPVNAAGWVAPGQGRPHANANANPNPGWIVPGQGIAPGSANPGWAAPAGNPGMRGSEQSHNGDRYPNQGDRGTHGGDSGYGGKSWNRQSSFGSGGRGGSSRPPAGGQRGVCRFHESGHCRKGASCDYIHN* | 1481 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops10g02639 | 1480 | Pfam | GYF domain | 912 | 954 | IPR003169 | GO:0005515 | |
Rops10g02639 | 1480 | SMART | gyf_5 | 910 | 965 | IPR003169 | GO:0005515 | |
Rops10g02639 | 1480 | CDD | SWIB-MDM2_like | 424 | 499 | - | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 520 | 549 | - | - | |
Rops10g02639 | 1480 | ProSiteProfiles | SWIB/MDM2 domain profile. | 418 | 501 | IPR003121 | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 1070 | 1092 | - | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 735 | 754 | - | - | |
Rops10g02639 | 1480 | SUPERFAMILY | SWIB/MDM2 domain | 424 | 500 | IPR036885 | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 856 | 878 | - | - | |
Rops10g02639 | 1480 | ProSiteProfiles | Plus3 domain profile. | 560 | 693 | IPR004343 | GO:0003677 | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 1257 | 1298 | - | - | |
Rops10g02639 | 1480 | CDD | PHD5_NSD | 203 | 248 | - | - | |
Rops10g02639 | 1480 | SMART | rtf1 | 560 | 670 | IPR004343 | GO:0003677 | |
Rops10g02639 | 1480 | CDD | GYF | 909 | 964 | IPR003169 | GO:0005515 | |
Rops10g02639 | 1480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1455 | 1480 | IPR000571 | GO:0046872 | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 82 | 194 | - | - | |
Rops10g02639 | 1480 | FunFam | Zinc finger CCCH domain-containing protein 19 | 911 | 968 | - | - | |
Rops10g02639 | 1480 | Gene3D | - | 562 | 690 | IPR036128 | GO:0003677 | |
Rops10g02639 | 1480 | PANTHER | UNCHARACTERIZED | 86 | 1479 | - | - | |
Rops10g02639 | 1480 | ProSiteProfiles | Zinc finger PHD-type profile. | 201 | 267 | IPR019787 | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 1007 | 1038 | - | - | |
Rops10g02639 | 1480 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 192 | 295 | IPR013083 | - | |
Rops10g02639 | 1480 | Gene3D | SWIB/MDM2 domain | 415 | 509 | IPR036885 | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 348 | 412 | - | - | |
Rops10g02639 | 1480 | Pfam | Plus-3 domain | 565 | 668 | IPR004343 | GO:0003677 | |
Rops10g02639 | 1480 | Gene3D | - | 910 | 969 | IPR035445 | - | |
Rops10g02639 | 1480 | FunFam | Zinc finger CCCH domain-containing protein 19 | 412 | 506 | - | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 840 | 878 | - | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 1011 | 1038 | - | - | |
Rops10g02639 | 1480 | Coils | Coil | 101 | 146 | - | - | |
Rops10g02639 | 1480 | FunFam | Zinc finger CCCH domain-containing protein 19 | 193 | 293 | - | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 354 | 369 | - | - | |
Rops10g02639 | 1480 | SUPERFAMILY | GYF domain | 900 | 962 | IPR035445 | - | |
Rops10g02639 | 1480 | CDD | Bbox1 | 249 | 275 | - | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 735 | 803 | - | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 1432 | 1446 | - | - | |
Rops10g02639 | 1480 | FunFam | Zinc finger CCCH domain-containing protein 19 | 561 | 690 | - | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 82 | 97 | - | - | |
Rops10g02639 | 1480 | SMART | PHD_3 | 203 | 249 | IPR001965 | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 1063 | 1092 | - | - | |
Rops10g02639 | 1480 | ProSiteProfiles | GYF domain profile. | 909 | 963 | IPR003169 | GO:0005515 | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 1382 | 1459 | - | - | |
Rops10g02639 | 1480 | SUPERFAMILY | FYVE/PHD zinc finger | 200 | 254 | IPR011011 | - | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 98 | 166 | - | - | |
Rops10g02639 | 1480 | Pfam | SWIB/MDM2 domain | 426 | 499 | IPR003121 | - | |
Rops10g02639 | 1480 | ProSitePatterns | Zinc finger PHD-type signature. | 204 | 264 | IPR019786 | - | |
Rops10g02639 | 1480 | SUPERFAMILY | Plus3-like | 561 | 689 | IPR036128 | GO:0003677 | |
Rops10g02639 | 1480 | MobiDBLite | consensus disorder prediction | 1219 | 1298 | - | - | |
Rops10g02639 | 1480 | SMART | swib_2 | 439 | 504 | IPR019835 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops10g02639 | Rops-Chr10 | 45704160 | 45714974 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops10g02639 | 201 | 288 | PHD Transcription Factor Family | AT5G36670 | 32.000 | 6.37e-07 | 52.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SWI/SNF-BAF60b | Rops10g02639 | Plus-3 | 4.1e-24 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops10g02639 | - | - | aprc:113865790 | 2145.93 |