Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02634 ATGCGTCGGCCGAATTTGGTTCGAAACCTCGTCGTTGTGGACAACAATGGTGATTAAGTTCAATTCAAACCTAACGGAACTCGTGTGTGGTTTCCCCTCTCGTTCTTGGTGACAGAAATGGAGTTTGCAGTGGCTAAAGCTTTGAAACCAAGTTTAAGGAGGGAGTTTATTTTTCAGCAAACATTTTGTGAAGAGATTTTGTGCTTGAACGCGAACACCATGGTTGGTGGTGAGGATTTCTCAGTGGATGACCTCCTTGACTTCTCTAACGATGATGAACAACAAGTATATCACGAAGAAAAAGACAGCTTATCATCTGTTTCGTCACAGTCACAAGATAGCAACTCCAATTCCACCGGCGTTTCCTATGATTCAATTTTCTCCGACGAACTAGCCGTTCCGGCTGGTGATTTGGAAGACCTGGAGTGGGTTTCTCACTTCGTAGATGACTCTATTCCAGAGCTTTCTCTTCTCTACCCGTTTCGTTCCGAGCATAGGGCTGAACCGGAACCTACCAGACTGTGTTCTTCTTCAGCCAAGAAGAAAACTCCTCGTTTTCCCTCTGAAATGAAAATAACCACCAAGACCAGAACCACAAAGAACAGAAAATCAAACCCTCGCGTTTGGTTACTTAGCCCCTTGCTTTCACGTCCATCTTCGCCGTCGTCGTGTTCCTCCGTGCTTTCTTCAACGGCGCCGCCGGTGGTCTCCGGTGAGCCGCAGGCGAAGAAGCAGAAGAGAAAGGCCGAAGTCCAAGCCCAATCCGTTGGTGGGGCCCAGTTTCAACGACGGTGCAGTCATTGCCAGGTGCAAAAAACGCCGCAATGGAGGACCGGTCCACTAGGCGCCAAAACACTTTGCAACGCATGTGGGGTTCGTTACAAATCCGGTCGGCTTTTTTCGGAGTATAGACCGGCTTGCAGCCCAACCTTCTGTAGTGATATTCACTCCAACAGCCACCGTAAAGTGTTGGAGATGAGGAAGAAGAAGGAGATGATGGATGGACCGGAAACCGGTTTGGTTCAGACTCACATGGTTCCCACTTGCTGA 1050 0.4867 MRRPNLVRNLVVVDNNGD*VQFKPNGTRVWFPLSFLVTEMEFAVAKALKPSLRREFIFQQTFCEEILCLNANTMVGGEDFSVDDLLDFSNDDEQQVYHEEKDSLSSVSSQSQDSNSNSTGVSYDSIFSDELAVPAGDLEDLEWVSHFVDDSIPELSLLYPFRSEHRAEPEPTRLCSSSAKKKTPRFPSEMKITTKTRTTKNRKSNPRVWLLSPLLSRPSSPSSCSSVLSSTAPPVVSGEPQAKKQKRKAEVQAQSVGGAQFQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEMRKKKEMMDGPETGLVQTHMVPTC* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02634 348 CDD ZnF_GATA 263 320 IPR000679 GO:0006355|GO:0043565
Rops10g02634 348 Pfam GATA zinc finger 264 297 IPR000679 GO:0006355|GO:0043565
Rops10g02634 348 FunFam GATA transcription factor 254 338 - -
Rops10g02634 348 ProSiteProfiles GATA-type zinc finger domain profile. 262 294 IPR000679 GO:0006355|GO:0043565
Rops10g02634 348 MobiDBLite consensus disorder prediction 100 120 - -
Rops10g02634 348 MobiDBLite consensus disorder prediction 215 245 - -
Rops10g02634 348 SMART GATA_3 258 312 IPR000679 GO:0006355|GO:0043565
Rops10g02634 348 MobiDBLite consensus disorder prediction 215 235 - -
Rops10g02634 348 MobiDBLite consensus disorder prediction 96 120 - -
Rops10g02634 348 ProSitePatterns GATA-type zinc finger domain. 264 289 IPR000679 GO:0006355|GO:0043565
Rops10g02634 348 PANTHER GATA TRANSCRIPTION FACTOR 68 335 - -
Rops10g02634 348 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 259 319 - -
Rops10g02634 348 Gene3D - 257 308 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02634 Rops-Chr10 45660945 45666166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02634 78 331 C2C2-Gata Transcription Factor Family AT5G25830 41.958 1.22e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops10g02634 GATA 1.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02634 - - gmx:100780311 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02634 10 45660945 45666166 Rops10g02634 10 45660945 45666166 ECH
Rops10g02634 10 45660945 45666166 Rops3g00492 3 6314859 6316274 ECH