Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02628 ATGAAGATCCAGTGTGATGTGTGCGCCAAAGTGGAGGCCTCTGTGTTCTGTGCTGCAGATGAAGCTGCTCTTTGCCATAGCTGTGATCTTACCATCCACCATGCCAACAAGCTTGCAGGCAAACACCCGCGTTTCTCTCTGCACCACCCCACTTCCAAAGATGTCCCTCTTTGTGATATCTGCCAAGAGAGGCGTGCATATCTATTTTGTCAAGAAGACAGAGCAATTCTTTGCAGAGAATGTGACCTTCCTATTCATAGAGCCAATGAACATACCCAGAAACATAACAGGTTTCTTCTCACGGGTGTGAAGCTCTCTGGCACTTGCTTGGACCCAGATTCATCATCCACCAATGGTCCTGACAGAGTCACTGACTCTGAAGCTAGAAACTTTAGATCCAAAGCTAACAGACCCAGATCATTTTCAAATGAAAATGCCAGCTCTTCTTGCAAGGTTGAGGACAACATGGCTAGTGACACTGGTTCAGTTTCGACAAGTAGCATTTCTGAATACTTGATTGAAACAATACCTGGTTACTGTTTTGAAGACTTTCTTGATGCTTCATTTAATGGTTTCTGTAAGAATTATGATTGTCATTCAGATTTTGAGGACCAAGATCTTGAAGTTAGCACGTGTTTGTTTCCGTCTGTAACGTGGGAACTTAGCTCTTCAAGTCTTCCCCAGATTGGTTCTGTGATTGGAGTTAAGGAAATTCCAAAAACACTCTCTGGATAA 735 0.434 MKIQCDVCAKVEASVFCAADEAALCHSCDLTIHHANKLAGKHPRFSLHHPTSKDVPLCDICQERRAYLFCQEDRAILCRECDLPIHRANEHTQKHNRFLLTGVKLSGTCLDPDSSSTNGPDRVTDSEARNFRSKANRPRSFSNENASSSCKVEDNMASDTGSVSTSSISEYLIETIPGYCFEDFLDASFNGFCKNYDCHSDFEDQDLEVSTCLFPSVTWELSSSSLPQIGSVIGVKEIPKTLSG* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02628 244 Gene3D Classic Zinc Finger 1 99 - -
Rops10g02628 244 MobiDBLite consensus disorder prediction 111 159 - -
Rops10g02628 244 SMART bboxneu5 4 47 IPR000315 GO:0008270
Rops10g02628 244 SMART bboxneu5 53 100 IPR000315 GO:0008270
Rops10g02628 244 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Rops10g02628 244 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Rops10g02628 244 CDD Bbox1_BBX-like 5 47 - -
Rops10g02628 244 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops10g02628 244 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Rops10g02628 244 CDD Bbox1_BBX-like 57 100 - -
Rops10g02628 244 FunFam B-box zinc finger protein 21 1 98 - -
Rops10g02628 244 MobiDBLite consensus disorder prediction 135 159 - -
Rops10g02628 244 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02628 Rops-Chr10 45524446 45525937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02628 1 186 C2C2-CO-like Transcription Factor Family AT4G39070 55.072 4.00e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops10g02628 zf-B_box 5.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02628 - - tpra:123898275 322.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02628 10 45524446 45525937 Rops10g02628 10 45524446 45525937 ECH