Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02623 ATGGCAACTTATTACACAAGTTCAAGTAATCAAAGAGATGTTGTGCCTATGCTCTGTCCTAGGGGGCCTTTGCCTAATTCGTATCCTGAGACACCAATGCTTCCGAGCAATATAACATTATATATGAACTCTGGTTCATATCCAGAAGCATTGTCCAGCAATTCTCAGCAGGAAAATAATTGCTTTGTGATTCCATCAATAGGTGCTTCACATTCCACTCCTGAACAGCAAGAAATCTTAGCAAATATTGGTGAGTTCCAAACTGGGGTTCATGATTTCAGTGGATGGAGAGAGGGTAGAAATGAGACGTCAGTCAGACAACTTATGAATGGACAGAACTTACAAGGCCAGGGATTATCTCTCAGCCTTGGAACCCAAATACCCTCAGAAATCCAAATGCCTCCTATCCACGAAAGGAATCATAATTCAAGTTTTGATCCGTTTTTGGGTACTCATCCATCAATTTCAGACAATGGGGCCTATAAAAGTGGCTCATCCAGGGATGAAGGTTTGAGACATTATGAAAATTTTACACCTGGGTTATCTGAAGCTAATCAAGATATGAATAGAGGAGATTTTTCATTGCATGGAATGTCAAGTGTTGGAAGACCAGTTCCCAATCCCAAATACCTCAAGGCAGCACAACAACTGCTCGACGAAGTTGTTGACACCAGAAAAGCTATTAAAAAACCTGATATGAAAAGTCATAGCATGCACGAGGACTCTAAGAAGAATTCCAAGCAGGATGATGAACAACTAGAAAATGAAAGGTTTTCTGCAAATGGAGTGCCTAATTCTCAAGGTTCTGCTAGTAACTCCTCTCGTGAGCTTTCACATGCAGAAAAGCAAGATCTGCACAACAAGTTAACAAAGCTTTTGTCTATGTTGGATGAGGTTGACGGTAGGTACAGACATTATTATCATCAGATGCAGATTGTTGTGTCATCAATTGATGTGATAGCAGGACATGGGGCAGCTAAACCATACACGGCACTTGCTCTTCGAACCATTTCATGCCATTTCCGGTGTTTGCGTGATGCAATTACTGGCCAAATCAGTGCAACACAAAAAAACCTTGGAGAGCAAGATATTTCTGGAAATAATAAAGGAGTTGGAATCTCAAGACTCAAGTATGTGGACCAACAAATCCAGCAACAGAGGGCTCTTCAGCATCTTGGCATGGCACAACACGCATGGAGGCCACAAAGGGGACTGCCAGAAAGCTCTGTTTCAATTCTTCGTGCTTGGCTGTTTGAGCATTTCCTTCATCCCTATCCAAAGGATTCTGACAAGATCATGTTGGCAAGACAGACCGGCTTGACTAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGTGTGCGTCTATGGAAACCTATGATTGAGGAGATGTACAAGCAAGAGAATCGTGATGCTGAAATGGACTCAAGTTCTTCATCTGAAAATGCATCCAAGGTAACAAAAGGTGATGTTAAGGCCTCCAATGATATGGGTGATGAATCGCAGCACTGTCAAAATTCAATAACCAATAAGAATTACAGTGGTGGACAAACTAAAGACCTCATATTTGATCAAATTCTTGATACGGAAATCGTGGCATCTACTGGATTAGCTAGTATCCAAAGCAGAGGTCGTGAGGTTGAAACTGAACATACGTTAGTAAAGCAGACTGAGGAGCAAAGTCCAAACTTCAATGATTGCAGTCTTTTGCCAGATGACACGGTTGTTCAGTGCGATGAAGCTAATGACAAGTTTATGGCAGTTGATCCAACATGTCAAATGTCAGAGTTTGGCAGATTCAAGTCAGGAAGTGGAGTGTCTCTGACTCTAGGCTTGCAGCATTGTGAAGGAGGTAATTTTTTGCCTGGTGAGACCCCTGTTAGATTGGTTTCCATGAGGGAGGATGACATCTACAATGATACAACAGCTTCTACCATAGAAGCTGAGACAGCAGGACTTGAGTGCATCAGTGCTGGAAACCACCAGCAAAGGTTCAGTTCACCCCATATGTTGCATGATTTTGTTGTTTGA 2031 0.42 MATYYTSSSNQRDVVPMLCPRGPLPNSYPETPMLPSNITLYMNSGSYPEALSSNSQQENNCFVIPSIGASHSTPEQQEILANIGEFQTGVHDFSGWREGRNETSVRQLMNGQNLQGQGLSLSLGTQIPSEIQMPPIHERNHNSSFDPFLGTHPSISDNGAYKSGSSRDEGLRHYENFTPGLSEANQDMNRGDFSLHGMSSVGRPVPNPKYLKAAQQLLDEVVDTRKAIKKPDMKSHSMHEDSKKNSKQDDEQLENERFSANGVPNSQGSASNSSRELSHAEKQDLHNKLTKLLSMLDEVDGRYRHYYHQMQIVVSSIDVIAGHGAAKPYTALALRTISCHFRCLRDAITGQISATQKNLGEQDISGNNKGVGISRLKYVDQQIQQQRALQHLGMAQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKQENRDAEMDSSSSSENASKVTKGDVKASNDMGDESQHCQNSITNKNYSGGQTKDLIFDQILDTEIVASTGLASIQSRGREVETEHTLVKQTEEQSPNFNDCSLLPDDTVVQCDEANDKFMAVDPTCQMSEFGRFKSGSGVSLTLGLQHCEGGNFLPGETPVRLVSMREDDIYNDTTASTIEAETAGLECISAGNHQQRFSSPHMLHDFVV* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02623 676 CDD homeodomain 399 460 IPR001356 GO:0003677
Rops10g02623 676 MobiDBLite consensus disorder prediction 149 163 - -
Rops10g02623 676 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Rops10g02623 676 MobiDBLite consensus disorder prediction 228 283 - -
Rops10g02623 676 SUPERFAMILY Homeodomain-like 400 466 IPR009057 -
Rops10g02623 676 SMART HOX_1 399 463 IPR001356 GO:0003677
Rops10g02623 676 MobiDBLite consensus disorder prediction 149 207 - -
Rops10g02623 676 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Rops10g02623 676 MobiDBLite consensus disorder prediction 228 256 - -
Rops10g02623 676 Gene3D - 395 473 - -
Rops10g02623 676 Pfam Associated with HOX 207 349 IPR006563 -
Rops10g02623 676 FunFam BEL1-like homeodomain protein 4 402 464 - -
Rops10g02623 676 MobiDBLite consensus disorder prediction 258 276 - -
Rops10g02623 676 MobiDBLite consensus disorder prediction 179 193 - -
Rops10g02623 676 MobiDBLite consensus disorder prediction 469 502 - -
Rops10g02623 676 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 122 482 - -
Rops10g02623 676 SMART prehox3 199 350 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02623 Rops-Chr10 45430748 45435772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02623 584 676 Homeobox Transcription Factor Family AT4G34610 32.632 1.08e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Rops10g02623 POX 2e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02623 - - gmx:100801522 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02623 10 45430748 45435772 Rops10g02623 10 45430748 45435772 ECH