Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02617 ATGGCCTCCTCAAGTGGAACATCTTCAGGGTCTTCCATGGTTCAAAGCTCTGGTTCAGAGGAGGATTTGCAGGCGCTGATGGATCAGAGGAAGAGGAAGAGAATGATATCAAACCGTGAATCAGCAAGGAGATCTCGAATGAGGAAACAGAAGCACTTGGATGATCTTGCTGCTCAGGTGGCTCAGCTCAGGAACGAGAATCAACAGATACTCACATCAGTGAACCTCACCACACAAAGGTACTTCGCTGTTGAGGCCGAAAACTCAGTGCTGAGAGCTCAAGTGAGTGAGCTAAGCCACAGGCTAGAGTCTTTGAATGAGATCATTGACTTCATGAATGCCACCAATGGAACCTCCTTTTTTGAGCCTGCTAATAATAATAGCTACTACAACCCTTTTAATATGGCCTATCTGAACCAGCCAATCATGGCTTCTGCTGATATATTGCAGTTCTGA 456 0.4583 MASSSGTSSGSSMVQSSGSEEDLQALMDQRKRKRMISNRESARRSRMRKQKHLDDLAAQVAQLRNENQQILTSVNLTTQRYFAVEAENSVLRAQVSELSHRLESLNEIIDFMNATNGTSFFEPANNNSYYNPFNMAYLNQPIMASADILQF* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02617 151 Coils Coil 88 108 - -
Rops10g02617 151 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Rops10g02617 151 FunFam BZIP transcription factor 28 79 - -
Rops10g02617 151 Coils Coil 46 73 - -
Rops10g02617 151 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Rops10g02617 151 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Rops10g02617 151 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Rops10g02617 151 Gene3D - 28 81 - -
Rops10g02617 151 MobiDBLite consensus disorder prediction 24 50 - -
Rops10g02617 151 MobiDBLite consensus disorder prediction 1 50 - -
Rops10g02617 151 MobiDBLite consensus disorder prediction 1 23 - -
Rops10g02617 151 Pfam bZIP transcription factor 30 74 IPR004827 GO:0003700|GO:0006355
Rops10g02617 151 PANTHER BZIP TRANSCRIPTION FACTOR 44 4 149 - -
Rops10g02617 151 SUPERFAMILY Leucine zipper domain 30 82 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02617 Rops-Chr10 45357506 45358724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02617 24 151 bZIP Transcription Factor Family AT4G34590 54.676 7.77e-47 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops10g02617 bZIP_1 9.5e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02617 K25786 - gmx:100101862 224.172