Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02601 ATGTTGCACTGTCTCAATACTTCGGGGAATCTAGCTGGGAACTGCTCCGACATGACAGTGTTGGAAAGGCAAAGGGAAAGGGAAAGGATGAAGTGGCAACAAGAGCAAGGCTACTTCTCTGGAACTGGGTTCAATGGTGTGTTCTCTTCCTCTTCTTCTCTGCATGTTCATAATTCTCAGGGGTCCATGATGATCGCTGCTGATTCAGGTTCTGCACTTGCTGAGGTTGTGGCTCAGTCAATGAAGCCTGACCCAGGATTGAACAAGTTTCATATGCAAGTTGACGCTGTACCTGCTGCTCCTGGCTTTGATGTGAATTCTGCAATTTCAAGGACTTTTAGCTGTCCACCTGTTCTGACAGAGCCCAAAGGCACAGACTCTTCAATTGGGAAAGAGAAAGAAAAAGAGAGTTTCAAGAAGAGGAAAGCTGACAGGTCTCAGAATCCCAAGGTTGTTGCAGAAAATGATAACAAAGACAAGAAGATCAAACTAGGTTCTGACGACTGGGAATCCAAAATCACAGGGCAGACCACCACCAAGGATAACACAACCACTACAAATAACAATGACAGAGATACTTGTGCAACAGATACCTCCAATTCTAAGGAAAATTCAAAAGCATCCGAGGTTCAAAAGCCTGACTACATTCATGTTCGAGCACGTCGTGGCCAAGCCACTGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCAGGTTGCAACAAACTTACAGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAGTCTCTTCAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCAGTGAACCCAAGGCTTGACTTCAATATTGATGATCTGTTTGACAAAGAGGTGTTCCCTGCTTGTGATGCAAGTTTTCCAGCCTTAGGGATGATGCCATCAGAGATGACTAACCCTGCCTATCTTCAATTCAATTCACCACAGCAAATTGTTTCTTATGGTGGATTAGATGCAGGGATGAACCCTTCAGATATGGGGCTAAGAAGGACCATAAGTGCCCCTGTATCTGTGCCTGAAACGTTTCTTGACTCGGCCTGTTTCACTCAAATTCTACCTTCCTCAACATGGGAAAGTGATTTCCAAAACATTTACGACTTGGCTTTTGATCAAGCACGAGCAACAACATCCTTTCCTTCTCAGCTCTATTCAAAGGTCTAG 1236 0.4345 MLHCLNTSGNLAGNCSDMTVLERQRERERMKWQQEQGYFSGTGFNGVFSSSSSLHVHNSQGSMMIAADSGSALAEVVAQSMKPDPGLNKFHMQVDAVPAAPGFDVNSAISRTFSCPPVLTEPKGTDSSIGKEKEKESFKKRKADRSQNPKVVAENDNKDKKIKLGSDDWESKITGQTTTKDNTTTTNNNDRDTCATDTSNSKENSKASEVQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKLTGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDDLFDKEVFPACDASFPALGMMPSEMTNPAYLQFNSPQQIVSYGGLDAGMNPSDMGLRRTISAPVSVPETFLDSACFTQILPSSTWESDFQNIYDLAFDQARATTSFPSQLYSKV* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02601 411 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 131 330 IPR024097 GO:0006355
Rops10g02601 411 CDD bHLH_AtBPE_like 214 299 - -
Rops10g02601 411 Gene3D - 221 295 IPR036638 GO:0046983
Rops10g02601 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 274 IPR011598 GO:0046983
Rops10g02601 411 MobiDBLite consensus disorder prediction 116 159 - -
Rops10g02601 411 MobiDBLite consensus disorder prediction 126 159 - -
Rops10g02601 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 222 293 IPR036638 GO:0046983
Rops10g02601 411 Pfam Helix-loop-helix DNA-binding domain 228 275 IPR011598 GO:0046983
Rops10g02601 411 SMART finulus 230 280 IPR011598 GO:0046983
Rops10g02601 411 MobiDBLite consensus disorder prediction 172 211 - -
Rops10g02601 411 FunFam Basic helix-loop-helix transcription factor 221 293 - -
Rops10g02601 411 MobiDBLite consensus disorder prediction 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02601 Rops-Chr10 45134528 45137309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02601 9 390 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 39.098 1.18e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops10g02601 HLH 2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02601 - - gmx:100798855 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02601 10 45134528 45137309 Rops10g02601 10 45134528 45137309 ECH
Rops10g02601 10 45134528 45137309 Rops1g01666 1 35138488 35141166 ECH