Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02600 ATGGCCTCAAGCACCCTAAGCAAACAAAAGCCTTCTGATTCATCTTGGACTCCAAAACAGAACAAGTTGTTTGAAAAGGCACTTGCAAAATATGACAAGGATACCCCTGACCGCTGGCAAAATGTAGCCAAAGCAGTTGGTGGTAAATCAGCTGAAGAAGTTAAGAGACACTATGAGTTACTCTTGGAGGATCTCAGACACATAGAGTCCGGCCATATCCCCATTCCCAACTACAAAGGAAGTGGCTAG 249 0.4458 MASSTLSKQKPSDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSAEEVKRHYELLLEDLRHIESGHIPIPNYKGSG* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02600 82 Gene3D - 7 75 - -
Rops10g02600 82 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Rops10g02600 82 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Rops10g02600 82 MobiDBLite consensus disorder prediction 1 20 - -
Rops10g02600 82 CDD SANT 15 62 IPR001005 -
Rops10g02600 82 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 80 IPR044636 GO:0003700
Rops10g02600 82 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Rops10g02600 82 FunFam Transcription factor SRM1 8 75 - -
Rops10g02600 82 SMART sant 12 64 IPR001005 -
Rops10g02600 82 Pfam Myb-like DNA-binding domain 14 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02600 Rops-Chr10 45101482 45101730 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops10g02600 Myb_DNA-binding 3.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02600 - - gmx:100785292 157.918