Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02597 ATGGTGGATCGGCGAGGCATAGTGTGGTTTGGGTTCTTGTTCTTTTTGCTATTTGAGGTGACATTGGAGCAGATTGAGTCACTGAGTTCACCAACTGAGAGAGCAGCACTTCTTCAACTGAGGGGTTCTCTGGGTTTGAGGAGCAGGGAATGGCCAAGAAAGCCAGACCCTTGCTTAATCTGGAATGGTATCACATGCCAGAATGGTCGTGTTGTTGGGATCAATATCTCTGGCTTTAGAAGAACAAGACTTGGCAGAAGAAACCCACAATTTGCAGTGGATGCCTTGGCCAATTTCACTCTCTTGCAGACTTTCAATGCCTCCAATTTCCTCCTCCCTGGTCCTATTCCTGATTGGTTTGGTCTCAACCTCCCTTCACTTCGTGTGCTTGATCTTCGTTCTTGCGCCATTGTTAATGCTATCCCTTCCACTCTTGGGAATTTAACCAACCTCACTGCTCTATATCTTTCTGATAACAAACTTACTGGGACAGTTCCTGATACTCTTGGTCAACTCTCAGCCCTTTCTGTTCTTGATCTCTCCAGGAATTCTCTTTCTGGGTTCCTACCAACATCATTTGCCTTTCTTGCAAATCTTTCTTACCTTGACATGTCTGCAAATTTCTTGTCTGGGCCTATACCCCCGGGCATAGGGACACTCTCCAGGTTACAATACTTGAATCTTTCCAACAATGACCTAACTTCTTTGCCTGCCCAATTGGTGGGTCTTAATAGCTTAACTGACCTTGATCTTAGTGGGAATTCTTTCTCTGGTGGAGTTCTTCCGGATTTGAAAGGGTTGAGGAACTTGCGGAGAATTATACTTGCAAACAGCAGGCTCAATGGACCTTTGCAGGGGGACTTGTTTACTGCTTCATTGCAATTGCAGATTATTGTGCTGAGACAAAACAATTTTACTGGTTCTTTGCCTGTTGAGTTGTGGTCTTTGCCAAGATTGACCTTCCTCGATGTGTCTGGCAATAACTTCAGTAGTCTGCTTCCAAATTCTAGTTCAACTGCCAATGCTACTGTTTCGGTGCTGAATATTTCTCATAATAAGTTTTATGGAGGCCTCACACCTGTGCTCAGAAGGTTTGGTTTTGTTGATCTTTCAAACAATTATTTTGAGGGCAAGGTTCTGGATTTCATGCTTAATGTGTCTCTAGATAGCAACTGCCTCCAAAACGTGACAAATCAGAGGACACCAGGGGAATGTGCATCATTTTATGCAGAGAGGGGCCTCAGCTTTGATAATTTTGGACGCCCGAATTCAACGAATCCTCCTGCTGCAGGAGGCTCTGGGAAGAGTAATAAAACTAAGATCATATTGGCAGCAGTCTTGGGTGGACTGGGTTTAATTGCACTTTTGGTGTTCCTACTGGTCCTGTTGCTGCTGTGCCTTCGTAAGAGGGGGGATTCAAATAAAAGGGGAAATGGTGTGGGCCCTGCTCCTGCTGGAGGCAGTCCTCCACATCCTGGTGTATCAATAAACTTTTCAAATGTAGGAGACTCATTTACATATCATCAGTTGCTCCAGGCAACAGGAGATTTCAACGACGCAAATCTTATCAAACATGGCCACACTGGGGATTTCTTCAATGGTGTTTTGGAGAATGGGACTCGTGTCATCGTCAAAAGGATCGACATGCATTCAACTAAAAAGGATGCTTACCTAGTGGAATTGGACTTCTTCAGTAGGGTTTCTCATCAAAGATTTGTTCCCTTGTTAGGTCATTGCTTAGAAAATGAGAACGAGAAGTGCCTGGTTTATAAATATATGCCAAATGGGGACCTGTCTAATTCCTTATTCTACAAAAACTCGACGTCTGAAGATGGTACGTTGCAGTCATTGGACTGGATAACTAGGTTAAAAATTGCTACTGGAGCAGCTGAGGCCCTAACGTATCTGCATCATGAATGTGTTCCACCCATTGTTCACAGAGATGTTCAAGCGAGCAGTATACTACTAGATGATAAATATGAAGTTCGGTTAGGGAGTCTAAGTGAAGCCTGTACTCAAGAAGGTGATACTCATCAAAGTAAAATCACCCGGTTTCTGCGATTGCCTCAGTCCTCTGAACAAGGCACATCTGGTTCATCTACATCAGTTTGTGCCTATGACGTTTATTGCTTTGGGAAAGTGTTACTTGAGCTGGTGACTGGTAAGCTGGGAATTAGTGCATCCAGTGATGGTGAAGTAAAGGAATGGTTGGATCATATTCTACCTTGCATTAGTATGTATGACAAGGAGCTTGTGACAAAAATTGTTGATCCATCTCTGGTTGTTGATGAGGATTTCTTAGAGGAAGTTTGGGCTATAGCCATAGTTGCCAGGTCTTGCCTAAATCCCAAACCTTCAAGAAGACCCCCAATGAGATATGTCCTCAAGGCTTTGGAAAACCCTTTAAAAGTTGTAAGGGAAGAAAGTTCCGGTTCTTCACGGCTTAAAGCAACCTCTTCTAGAGGCTCTTGGAATGCTACTTTGTTCGGTAGTTGGCGGCAGAGTTCATCCGATGTAACAGTAATTCCAGCAGCCTCTGGTACAAAAGTAGAAGGAACTAGTAGTTTAAAGCTTTCAGGAACTACCGGTTCGCAGTCACAGGGTAGCTTCCACAATGGTGGTGGTGATATTTCATCATCTCGAAGGCGTCATTCGAATGAGATATTCCCAGAGCCACCCGATGCAGAGAGGTTGGAGCAGGAATAG 2706 0.4405 MVDRRGIVWFGFLFFLLFEVTLEQIESLSSPTERAALLQLRGSLGLRSREWPRKPDPCLIWNGITCQNGRVVGINISGFRRTRLGRRNPQFAVDALANFTLLQTFNASNFLLPGPIPDWFGLNLPSLRVLDLRSCAIVNAIPSTLGNLTNLTALYLSDNKLTGTVPDTLGQLSALSVLDLSRNSLSGFLPTSFAFLANLSYLDMSANFLSGPIPPGIGTLSRLQYLNLSNNDLTSLPAQLVGLNSLTDLDLSGNSFSGGVLPDLKGLRNLRRIILANSRLNGPLQGDLFTASLQLQIIVLRQNNFTGSLPVELWSLPRLTFLDVSGNNFSSLLPNSSSTANATVSVLNISHNKFYGGLTPVLRRFGFVDLSNNYFEGKVLDFMLNVSLDSNCLQNVTNQRTPGECASFYAERGLSFDNFGRPNSTNPPAAGGSGKSNKTKIILAAVLGGLGLIALLVFLLVLLLLCLRKRGDSNKRGNGVGPAPAGGSPPHPGVSINFSNVGDSFTYHQLLQATGDFNDANLIKHGHTGDFFNGVLENGTRVIVKRIDMHSTKKDAYLVELDFFSRVSHQRFVPLLGHCLENENEKCLVYKYMPNGDLSNSLFYKNSTSEDGTLQSLDWITRLKIATGAAEALTYLHHECVPPIVHRDVQASSILLDDKYEVRLGSLSEACTQEGDTHQSKITRFLRLPQSSEQGTSGSSTSVCAYDVYCFGKVLLELVTGKLGISASSDGEVKEWLDHILPCISMYDKELVTKIVDPSLVVDEDFLEEVWAIAIVARSCLNPKPSRRPPMRYVLKALENPLKVVREESSGSSRLKATSSRGSWNATLFGSWRQSSSDVTVIPAASGTKVEGTSSLKLSGTTGSQSQGSFHNGGGDISSSRRRHSNEIFPEPPDAERLEQE* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02597 901 Gene3D Ribonuclease Inhibitor 30 192 IPR032675 -
Rops10g02597 901 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 97 792 - -
Rops10g02597 901 FunFam Putative LRR receptor-like serine/threonine-protein kinase 593 818 - -
Rops10g02597 901 Gene3D Ribonuclease Inhibitor 193 408 IPR032675 -
Rops10g02597 901 Pfam Leucine rich repeat 268 329 IPR001611 GO:0005515
Rops10g02597 901 Pfam Leucine rich repeat 149 207 IPR001611 GO:0005515
Rops10g02597 901 Pfam Leucine rich repeat 219 255 IPR001611 GO:0005515
Rops10g02597 901 FunFam Predicted protein 487 592 - -
Rops10g02597 901 SUPERFAMILY Protein kinase-like (PK-like) 493 798 IPR011009 -
Rops10g02597 901 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 30 189 - -
Rops10g02597 901 ProSiteProfiles Protein kinase domain profile. 517 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02597 901 MobiDBLite consensus disorder prediction 850 901 - -
Rops10g02597 901 MobiDBLite consensus disorder prediction 850 876 - -
Rops10g02597 901 FunFam Leucine-rich repeat receptor protein kinase EMS1 190 287 - -
Rops10g02597 901 SMART LRR_bac_2 220 239 - -
Rops10g02597 901 SMART LRR_bac_2 148 168 - -
Rops10g02597 901 SMART LRR_bac_2 316 335 - -
Rops10g02597 901 SMART LRR_bac_2 243 264 - -
Rops10g02597 901 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 291 421 - -
Rops10g02597 901 Pfam Protein tyrosine and serine/threonine kinase 523 795 IPR001245 GO:0004672|GO:0006468
Rops10g02597 901 ProSiteProfiles Leucine-rich repeat profile. 222 244 IPR001611 GO:0005515
Rops10g02597 901 Gene3D Phosphorylase Kinase; domain 1 494 592 - -
Rops10g02597 901 MobiDBLite consensus disorder prediction 877 901 - -
Rops10g02597 901 Gene3D Transferase(Phosphotransferase) domain 1 593 818 - -
Rops10g02597 901 SUPERFAMILY L domain-like 90 416 - -
Rops10g02597 901 SMART LRR_typ_2 172 195 IPR003591 -
Rops10g02597 901 SMART LRR_typ_2 148 171 IPR003591 -
Rops10g02597 901 SMART LRR_typ_2 316 339 IPR003591 -
Rops10g02597 901 SMART LRR_typ_2 124 147 IPR003591 -
Rops10g02597 901 SMART LRR_typ_2 220 243 IPR003591 -
Rops10g02597 901 PRINTS Leucine-rich repeat signature 175 188 - -
Rops10g02597 901 PRINTS Leucine-rich repeat signature 220 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02597 Rops-Chr10 45049507 45055035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02597 32 690 Miscellaneous Gene Families AT2G16250 56.306 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Rops10g02597 PK_Tyr_Ser-Thr 1.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02597 - - gmx:100805769 1379.39