Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02596 ATGGCAGCGTCCGGCTACTCCTCCGGCGGTGTTCTGCCGGAGCTAACTAATCGGACACCAATTCTTGGTCTCAAACTCTACGTCTTAATCCTGATTTTCGTTCTAATCGTGCTCTCAATCGTGCTCCTTATCCTCCTCTACATTTTCCGGAGCCGAAGCTCTAAGAAACGCAAAATGCGAGTGAAGCACAGTTCCGGCACGATCCCACTCGTCTCAAAGGAGATCGTGGAGGTGCTGAGAATTGAACACGTCGACGATGATCCGAAGAAACTGAAGCGGGTGGAGTCAGAGGAGATCGAAGAGAGTGCGTCGGTGGAGTCTCCGTCTCCGAACATAGGGTGGGGACGATGGTATAGCATGAAGGAACTGGAGATTGCGACCGATGAGTTTGCAGAAGGGAACGTGATCGGAGAAGGAGGGTATGGAATTGTATACAGAGGAATTTTACAAGATGGTTCTGTGGTTGCTGTGAAGAATCTTCTCAATAACAAGGGTCAAGCAGAGAAAGAGTTCAAGGTGGAAGTTGAAGCTATTGGAAAAGTGAGGCATAAGAATTTGGTGGGGTTAGTTGGATATTGTGCAGAAGGTGCTCGAAGGATGCTTGTTTATGAATATGTTGACAATGGAACTTTGGAGCAGTGGCTGCATGGTGATGTAGGGCCAGTTAGCCCTTTGACATGGGAAATACGAATGAAGATTGCTGTTGGGACTGCAAAAGGGCTAGCCTACTTGCACGAAGGCTTAGAACCCAAAGTTGTCCACAGAGACGTGAAATCCAGTAACATTCTTTTGGACAAAAAGTGGAATGCCAAAGTATCAGACTTTGGACTGGCCAAGCTCTTGGGGTCTGAGAAAAGCTATGTGACCACGCGTGTAATGGGGACATTTGGATATGTTTCACCTGAGTATGCAAGCACGGGTATGCTTAATGAAGGCAGTGACGTGTATAGTTTTGGGATTCTACTTATGGAGCTAATTACAGGAAGAAGTCCCATTGATTATTCTAGGCCACCTGGAGAGATGAACTTGGTTGATTGGTTTAAGGGAATGGTAGCAAGTCGTCGTGGTGATGAGCTAGTTGATCCTTTAATTGAGATTCAACCCTCTCCAAGATCTTTGAAACGAGCTTTACTGGTTTGTCTGCGCTGTATAGATTTGGATGCTAGTAAGCGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGGCAGATGATTTTCCCTTTCGTTCTGAACTTCGAACAACTAGAGACAAAGATGCTGTTCCCTCTCAAGCAGCTGTTTCCACCAAGGTTCCATATCCAACAAGGCATGCGGAGCCCGTATATAAATCGAGCTGGAGATGA 1344 0.4628 MAASGYSSGGVLPELTNRTPILGLKLYVLILIFVLIVLSIVLLILLYIFRSRSSKKRKMRVKHSSGTIPLVSKEIVEVLRIEHVDDDPKKLKRVESEEIEESASVESPSPNIGWGRWYSMKELEIATDEFAEGNVIGEGGYGIVYRGILQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGARRMLVYEYVDNGTLEQWLHGDVGPVSPLTWEIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLLGSEKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELITGRSPIDYSRPPGEMNLVDWFKGMVASRRGDELVDPLIEIQPSPRSLKRALLVCLRCIDLDASKRPKMGQIVHMLEADDFPFRSELRTTRDKDAVPSQAAVSTKVPYPTRHAEPVYKSSWR* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02596 447 PIRSF TyrPK_CSF1-R 120 222 - -
Rops10g02596 447 PIRSF TyrPK_CSF1-R 221 405 - -
Rops10g02596 447 PIRSF TyrPK_CSF1-R 15 61 - -
Rops10g02596 447 SUPERFAMILY Protein kinase-like (PK-like) 105 402 IPR011009 -
Rops10g02596 447 FunFam Probable serine/threonine-protein kinase At1g01540 110 205 - -
Rops10g02596 447 Gene3D Phosphorylase Kinase; domain 1 88 205 - -
Rops10g02596 447 Pfam Protein kinase domain 132 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02596 447 FunFam Putative receptor-like serine/threonine-protein kinase 206 416 - -
Rops10g02596 447 CDD STKc_IRAK 136 402 - -
Rops10g02596 447 Gene3D Transferase(Phosphotransferase) domain 1 206 415 - -
Rops10g02596 447 ProSitePatterns Protein kinases ATP-binding region signature. 136 158 IPR017441 GO:0005524
Rops10g02596 447 SMART serkin_6 130 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02596 447 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Rops10g02596 447 ProSiteProfiles Protein kinase domain profile. 130 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02596 447 PANTHER OS01G0323000 PROTEIN 105 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02596 Rops-Chr10 45037749 45041892 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02596 110 402 Receptor kinase-like Gene Family AT4G02010 48.148 5.80e-93 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Rops10g02596 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02596 - - gmx:100779420 702.975