Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02587 ATGTTTGGACTTATCGATCCCATTAGCAAGGTTTGTATGGGGCGTGAGGCTTGGAGATTGAAGGTCAGGATCGTTAGGCTTTGGTGTGTTCCGATGTTTGGTAACACATCCCAAATAAATTCCATCCAAATGGTTTTCATGGATGAACATGGAGAAAGGATTCAGACTTCAGTGAAGAATACACTGTTGTACAAGTTCAAGCATTTTCTCCATGAGGGATATGTCTTTATCTTCACTCATTTCACTGTTATTCCCAATGTTGGGATGTACAGGGCAACTTCACATTCCTTTCGTTTGCTTTTTACATTTAAGACTAAGTACACTGTGGCTGAGTCTTCTATTATTCCTTTGCTTGGCTTACGTTTAGTTCCGTTTGATGATGTGCTTAAAAATGATCATGACTCTGATTATTTAGTTGACGTTATTGGTCTGTTGACTTCTGTTTCCTTGGAGAAGGACATTGAAAAGGATGGGAAATTGTCCAAGATGATTGTTATTGAGTTGACTTCAGATAAGGGTAAATTGGAATGTGCTATGTTCAGTGATTATGTTGGGATCTTGATGGATTTTGTTGTTGTGGATGTCAATGAGCATCCAGTGGTGATTATTCAATTTGTGAAAGTGAAGTTGTTTAGAGGCAAGATAGTGCTTCAAAATATCATGCATGCAACTTGGCTCCTGTTTAATCCTGATGTCGCAGAAGCTGTGGATTTTAGGAATGGGATTGCTGAACATGGAATTATTGATGATGTTCCTCTTCTATCTGGGACTGATTCATTTAGTTTGTTTGCTGAGGATGAGTTTATAAAGTCGTACCCTAAGAAATCTTTGAAGCAGTTGCATGGTATTTCTGAGTACTTAACTGGTGATAAAGTTCCTGGTCTCTTTGATGAGTTGGTTGGGAAAAGATTGTTATTTAAGACTGAGGTTAAGGTTGACAAATCTGTGCACTATGATGGTTCATTCCGTGTTAAGAAAGTTTGTGATGATGAATGTGTGATTTCTATGTATATGTTGAATGGTGCTGAGTGTACTCCATCAAGTCAACTTTCAAAGTTCCTTTCACTTCCATTGTTGATTCTACATCGAGTGGAGTTGGAGACGATGGGGATGTGTCTGAGTTCTACTTTTCATTCTGCTTCTGTGGCTGCCAAGCGTAAACTGGAGAATAGCTTTGTTGTGAATGGTGATGATACCAATGATATAATTGCCAAGGATCTTAATAAAGATATGGAGGATGTTTGTGATGTTAACCAGTTGTGCACACTGATGTCGTGGAGGCGATGTGGTTGTGAAGATTCCCAATCATCACAAGTATTTGGTTGGTTTAGTAGAAATTTGAATGAGTTCCATGCAGGTGCCAAGGAGGTTAATCAAGAATGGTATTCTGAGAGTGAAAGATGGAACAAAGTCTTCAAGATTAGTATAACTGGTCCTAATCTTTTAGATATTAATTATAAGGTTGGTTATGATGGTCCATTTGTTGGAGATGTTAGTAGGAATGATAATGTTGGTGGTGATGGCAGTGATGTTGGTAATCAGTTTCAACTTTTGTGGTCTGTCCAATTATCTGAAGCTTAA 1581 0.3827 MFGLIDPISKVCMGREAWRLKVRIVRLWCVPMFGNTSQINSIQMVFMDEHGERIQTSVKNTLLYKFKHFLHEGYVFIFTHFTVIPNVGMYRATSHSFRLLFTFKTKYTVAESSIIPLLGLRLVPFDDVLKNDHDSDYLVDVIGLLTSVSLEKDIEKDGKLSKMIVIELTSDKGKLECAMFSDYVGILMDFVVVDVNEHPVVIIQFVKVKLFRGKIVLQNIMHATWLLFNPDVAEAVDFRNGIAEHGIIDDVPLLSGTDSFSLFAEDEFIKSYPKKSLKQLHGISEYLTGDKVPGLFDELVGKRLLFKTEVKVDKSVHYDGSFRVKKVCDDECVISMYMLNGAECTPSSQLSKFLSLPLLILHRVELETMGMCLSSTFHSASVAAKRKLENSFVVNGDDTNDIIAKDLNKDMEDVCDVNQLCTLMSWRRCGCEDSQSSQVFGWFSRNLNEFHAGAKEVNQEWYSESERWNKVFKISITGPNLLDINYKVGYDGPFVGDVSRNDNVGGDGSDVGNQFQLLWSVQLSEA* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02587 526 SUPERFAMILY Nucleic acid-binding proteins 121 246 IPR012340 -
Rops10g02587 526 CDD RPA1_DBD_A_like 19 106 - -
Rops10g02587 526 Gene3D - 4 108 IPR012340 -
Rops10g02587 526 Gene3D - 115 247 IPR012340 -
Rops10g02587 526 Pfam Domain of unknown function DUF223 44 138 IPR003871 -
Rops10g02587 526 SUPERFAMILY Nucleic acid-binding proteins 6 111 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02587 Rops-Chr10 44930713 44936079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02587 5 261 Core DNA Replication Machinery Family AT4G19130 19.697 1.14e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02587 - - adu:110276578 255.373