Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02580 ATGGAGGGTGGTGAGAGACCGGGGGATGATAACTCCCATGGCAATTCCCATATGGATATGGTTGACGCCACTTCACAACAACATCATTCAGAAAAGGATCAAAATGTGGGTTCCCCTCCTCAATTGCCTACTCCCACTTCTCCTACTCAACCACAGAAGGATGAAGTAATGGTTGATCAGGGTGTTGATAACAAAAATGGCGATTCTACCCCTAGCCATATGCTAGAGACCAAAATAATTAGTGAGAATCAGCTTGAAATTGAAGACGCTAAAACCCTTTCGCATCAGGAGCTGATCACTCCCAAGCCTAAAGAAAAGAATGTTAGAGAAATGAAGAACGTGCTAAACGATACTGAGATGACTGATTATGATGAGTCTGGTACGTCGCTGGACCGAGAAGCATTTATGAAAGAGCTTGAAAATTTCTACAGACAGAGGTCCCTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCGCTAAATTGCCTCAAGTTATGGAGAGCTGTTATCAGACTAGGTGGCTACGATGTGGTAACTGCATCCAAGTTGTGGCGGCAAGTAGGGGAGTCTTTCCACCCCCCTAAGACTTGCACTACAGTCTCATGGACATTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTTGGATCATTCCATCAATCTCCAAGTGTGGAAAAAGAGACCAATGTATACCAGGCTTCTGGCTCAGGTAGGGCACGAAGGGATGCGGCAGCTCGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGACAAGAACTTCAGTTCCACACCAAAGCGTGAAAAGAACCTCAAAAGTATTGGTGTGATTAATAAACAGAGGACACCATCTGGTCTGGAGCATGCTGGGAAAGCTGCAAATATTGAAGGAGATAGGCAGTTGGTCACAGCAGTAGTGGACATTGGACCCCCAGCCGACTGGGTGAAGATCAATGTGCGGGAAACTAAGGATTGTTTTGAAGTGTATGCACTAGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTTTGCCGGAACAGGTTGACAATCCATGGGGAATTACCCCCTTCAAAAAGGTTGTGAACTTACCAGCAAGAATTGATCCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTGTGA 1290 0.4589 MEGGERPGDDNSHGNSHMDMVDATSQQHHSEKDQNVGSPPQLPTPTSPTQPQKDEVMVDQGVDNKNGDSTPSHMLETKIISENQLEIEDAKTLSHQELITPKPKEKNVREMKNVLNDTEMTDYDESGTSLDREAFMKELENFYRQRSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSFHQSPSVEKETNVYQASGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNFSSTPKREKNLKSIGVINKQRTPSGLEHAGKAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEQVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02580 429 Gene3D - 329 428 IPR008978 -
Rops10g02580 429 FunFam AT-rich interactive domain-containing protein 3 129 228 - -
Rops10g02580 429 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 23 426 IPR045147 GO:0006357
Rops10g02580 429 CDD ACD_sHsps_p23-like 344 423 - -
Rops10g02580 429 SUPERFAMILY ARID-like 118 226 IPR036431 GO:0003677
Rops10g02580 429 MobiDBLite consensus disorder prediction 1 73 - -
Rops10g02580 429 SUPERFAMILY HSP20-like chaperones 337 424 IPR008978 -
Rops10g02580 429 SMART ARID_2 126 216 - -
Rops10g02580 429 FunFam AT-rich interactive domain-containing protein 3 320 428 - -
Rops10g02580 429 SMART bright_3 130 221 IPR001606 GO:0003677
Rops10g02580 429 CDD ARID 131 216 - -
Rops10g02580 429 ProSiteProfiles ARID domain profile. 129 220 IPR001606 GO:0003677
Rops10g02580 429 MobiDBLite consensus disorder prediction 1 16 - -
Rops10g02580 429 Pfam Hsp20/alpha crystallin family 344 425 IPR002068 -
Rops10g02580 429 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 328 429 IPR002068 -
Rops10g02580 429 Gene3D - 130 227 IPR036431 GO:0003677
Rops10g02580 429 Pfam ARID/BRIGHT DNA binding domain 132 216 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02580 Rops-Chr10 44713451 44721648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02580 54 426 ARID Transcription Factor Family AT1G76510 64.644 4.40e-161 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops10g02580 HSP20 0.00021 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02580 - - gmx:100797486 687.952