Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02579 ATGGCTGCAACCCAAGGCCAACTAGGTGGGTTACTCCCAAACCTACACCTTCAAACGCCTAATACCCTCACCGCTCAACATGCCGACAATGGCGGAGGTGATGCCGGAGCCGGAGCTTCCTCCACCGGTCGCCGCCCTCGTGGCCGTCCTCCTGGCTCAAAGAACAAGCCCAAGTCACCAATCATAGTAACAAGGGACAACCCCAACGCGCTTCACTCGCACGTGCTGGAAATCTCCGCCGGAGCTGACCTGGTTGAGTGCCTCTCCAATTACGCTCGCCGCCGAGGGAGGGGCGTTTGTGTCCTCAGCGGCAACGGAACGGTGTCGCACGTGACGCTTCGTCAACCGGGGTCTCCTGCGGGGACAGTTGTGACCCTTCATGGGAGGTTTGAGATTCTTTCCATCTCGGGGACGGTTCTTCCGCCGCCGGCTCCTCCGGGAGCAGACGGGTTGTCGGTTTATTTGTCTGGTGGACAGGGACAGGTAGTTGGGGGCAGCGTGGTGGCTCCTTTGGTGGCTTCAGGTCCTGTGGTTTTGATGGCTGCTTCTTTTGCCAATGCCATGTTTGAAAGGTTGCCTTTACCCTTGGATGATCCTGCAACAACATCACAGTCTCAATCTTCTGGTGTGGGTGGAAGTGGACAAATGGAAGAAGCTAGTGGAAGTGTTCCTCCTTTCTTCAATAGGAACATCAGTAGGAGCAACTATCCCTTCTCCTCTTCCCTCCAGGGAGATCCATTTGGATGGGGTGCAACAACTTCAACTGCAAATGCAGAAGAAACACCCAAACATCCTCCATTTTAG 804 0.5535 MAATQGQLGGLLPNLHLQTPNTLTAQHADNGGGDAGAGASSTGRRPRGRPPGSKNKPKSPIIVTRDNPNALHSHVLEISAGADLVECLSNYARRRGRGVCVLSGNGTVSHVTLRQPGSPAGTVVTLHGRFEILSISGTVLPPPAPPGADGLSVYLSGGQGQVVGGSVVAPLVASGPVVLMAASFANAMFERLPLPLDDPATTSQSQSSGVGGSGQMEEASGSVPPFFNRNISRSNYPFSSSLQGDPFGWGATTSTANAEETPKHPPF* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02579 267 ProSiteProfiles PPC domain profile profile. 68 209 IPR005175 -
Rops10g02579 267 MobiDBLite consensus disorder prediction 23 65 - -
Rops10g02579 267 MobiDBLite consensus disorder prediction 196 226 - -
Rops10g02579 267 Gene3D - 72 202 - -
Rops10g02579 267 FunFam AT-hook motif nuclear-localized protein 71 200 - -
Rops10g02579 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 68 195 - -
Rops10g02579 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 185 IPR005175 -
Rops10g02579 267 MobiDBLite consensus disorder prediction 198 215 - -
Rops10g02579 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 214 IPR014476 GO:0003680
Rops10g02579 267 CDD DUF296 74 184 IPR005175 -
Rops10g02579 267 MobiDBLite consensus disorder prediction 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02579 Rops-Chr10 44704538 44705341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02579 41 194 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 73.457 2.73e-71 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02579 - - pvy:116128567 258.84