Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02578 ATGGCATACCAAGCGATTCAAGGCCCGAGTTCGGGATCGAGTTCGAGTTCGGGGTTTCAACTAATGAACTCTCCTTTCGGGGACACAACTTATACCAAGGTATTCGTTGGAGGATTGGCTTGGGAGACTCAGAGCGAAACCATGCGCCGTTACTTTGAGCACTTTGGTGAGATTCTAGAAGCCGTCGTGATCACTGATAAGAACACGGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCTAGGAGAGCCTGTGCTGATCCAACTCCTGTCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACTTGGTCGACCTCGTCCCCCTGTGCCCTATGGACGGATAAGACCAGCCTCCCCTTATGTTGGAAGTTTGCAACCAGCCCGTGGTGCTTATGTTGGAGGTTTTGGCTACCAGCAACCAGTTTCCTACGGCTATCAACAAGGATTGGTTTATCCTCCTTATGGGTATACGACATATGGACAAGAATACATCTACCCACAGAGTCTGTACAACCCATATGTGGGTCAACAGTACCTTCAGATATATGGAGTGCCTGGGGCAGTGAATACAACTCTCTATCCTTATGGACAAGTGGGTCAAGCACTTCCCAGTGGTCATGGTTATACATCAATGCAGGGTTATACACTACCTGGTCACCAGATAGTGCCCTATGGTGGATCCAATGTTAATGCCATTACAACTTCACCTATGCCTGCCATTCAAGCACCATATCCTAGTGGAATTGCTGCACCAGTTCCTGGCCAACCACAATTTATCGTTCCTGCTCCTTCTCCTCAGTTTATACAAGGTAGCGGTTCTGACCAAACAGCCGGCCTTGCAAGTTATTTATTTTGCATTCTAGAGGTCATATATAGTCATGCTCACCAAGTTGTGTCTGAGTCGCTCCAGATGGCGAAGGAAATTGGAACGTGCGAGCTGCTTTTCCATTTGGACGTTTACACTAGTGTATTTATACCTAATACTACCCGTACTCAGGAAGAGTGGCGGTAG 1032 0.4787 MAYQAIQGPSSGSSSSSGFQLMNSPFGDTTYTKVFVGGLAWETQSETMRRYFEHFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPVPYGRIRPASPYVGSLQPARGAYVGGFGYQQPVSYGYQQGLVYPPYGYTTYGQEYIYPQSLYNPYVGQQYLQIYGVPGAVNTTLYPYGQVGQALPSGHGYTSMQGYTLPGHQIVPYGGSNVNAITTSPMPAIQAPYPSGIAAPVPGQPQFIVPAPSPQFIQGSGSDQTAGLASYLFCILEVIYSHAHQVVSESLQMAKEIGTCELLFHLDVYTSVFIPNTTRTQEEWR* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02578 343 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Rops10g02578 343 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Rops10g02578 343 SUPERFAMILY RNA-binding domain, RBD 11 121 IPR035979 GO:0003676
Rops10g02578 343 Gene3D - 4 118 IPR012677 -
Rops10g02578 343 SMART rrm1_1 33 105 IPR000504 GO:0003723
Rops10g02578 343 CDD RRM_RBM24_RBM38_like 32 107 - -
Rops10g02578 343 PANTHER BOULE-RELATED 10 244 - -
Rops10g02578 343 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02578 Rops-Chr10 44667472 44672563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02578 21 108 C2H2 Transcription Factor Family AT2G19380 42.045 1.81e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02578 - - gmx:100779244 549.28