Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02575 ATGTCGGGATCGGAGCAATTCACGGTTGGGTTACACAAACCCCAACCACAGCCACAACCGCCGCCGCCGCAGCAACTTCAGAATCTGCGATTAGATTTTGCTGCTGACGGTGTTTATAAGCCTGCTCCAACTTATCACACATCAGCCACCGTTGCTGCTAACATCAACGGTGGAGAGTCCTCTGCCGCGACGGTGCCACCGGGCCTGGGCCTGAGCCCAGTGGGTGGCTCTTCTACTTCTGAACCGATGAAAAGGAAGAGGGGGAGGCCCAGGAAATATGGGCCTGATGGTACCATGTCTTTAGCCTTGACAACCACCACCACCACTCCGCCGTCTGTTCCCGGTGGGTCGTTTTCTCCGGCTGCTACTTCGGCTTCTGCTTCACCTAGTGGTTCCACGAAGAAGGGTAGAGGCAGGCCTCGTGGCTCTCTCAACAAGACTCACTCAAAGCCTAAAGGATCGACAGGTTCTTCATTTATGCCACATGTTATTACGATTAAAGCGGGAGAGGACTTGGCGTCAAAGATTATGGCACTGTCTCAGAATATGACTAGACATATTTGCATATTAGCAGCAAATGGATCCATATCGAATGTGACCCTTCATCAACCTGCGTCATCCGGTGGAACAGTGACATATGAGGGGAAATTTGAGATACTATCACTTGGTGGTTCTTTCTTTCTTCCTGAAAATGGTAGTAGTCAAAGAATTGGTGGGCTAAATGTGTCCTTATCAGGACCAGATGGCCGTGTTTTGGGTGGTGGAGTTGCCGGTCTTCTAATAGCTGCATCTCCCGTTCAGGTAGTATTGGGGAGCTTCGCTACAGAAGGTCACAAGGGATCGAAGACTACTAACGAAGGAAACCAAGCTGCCCAGCCAAAGGTTTCCACGGCAGGGCAGAGCAGCTCCCCGTCACGTGGTACACTTAGTGAATCGTCGGGCGGGCCTGGGAGCCCTCTTAACCCGAGCACCGGAACTTGTAATAACAGTAACCCACAAGGCATTCCAGGCATTCCTTGGAAGTAA 1026 0.5156 MSGSEQFTVGLHKPQPQPQPPPPQQLQNLRLDFAADGVYKPAPTYHTSATVAANINGGESSAATVPPGLGLSPVGGSSTSEPMKRKRGRPRKYGPDGTMSLALTTTTTTPPSVPGGSFSPAATSASASPSGSTKKGRGRPRGSLNKTHSKPKGSTGSSFMPHVITIKAGEDLASKIMALSQNMTRHICILAANGSISNVTLHQPASSGGTVTYEGKFEILSLGGSFFLPENGSSQRIGGLNVSLSGPDGRVLGGGVAGLLIAASPVQVVLGSFATEGHKGSKTTNEGNQAAQPKVSTAGQSSSPSRGTLSESSGGPGSPLNPSTGTCNNSNPQGIPGIPWK* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02575 341 MobiDBLite consensus disorder prediction 58 161 - -
Rops10g02575 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 276 - -
Rops10g02575 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 330 IPR039605 GO:0003680
Rops10g02575 341 MobiDBLite consensus disorder prediction 278 341 - -
Rops10g02575 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 274 IPR005175 -
Rops10g02575 341 MobiDBLite consensus disorder prediction 99 133 - -
Rops10g02575 341 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Rops10g02575 341 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Rops10g02575 341 ProSiteProfiles PPC domain profile profile. 156 294 IPR005175 -
Rops10g02575 341 MobiDBLite consensus disorder prediction 1 26 - -
Rops10g02575 341 Gene3D - 161 289 - -
Rops10g02575 341 MobiDBLite consensus disorder prediction 278 335 - -
Rops10g02575 341 MobiDBLite consensus disorder prediction 147 161 - -
Rops10g02575 341 CDD DUF296 161 273 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02575 Rops-Chr10 44645894 44650696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02575 11 341 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 47.965 4.75e-70 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02575 - - minc:123229336 294.278