Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02573 ATGTTGGCAATGGAAGAGGTACTGTGTGAACTTACTGATCATGAAAAGAGAAATGAGCAAGGTCTACCACCGGGTTTTAGGTTTCATCCAACTGATGAAGAACTTATAACCTTTTATTTGGCTTCTAAGGTGTTTAATGGGAGCTTCACTAATGTCAAGTTTGCTGAGGTTGACCTCAATAGATGTGAGCCATGGGAACTTCCAGATGTGGCAAAAATGGGAGAGAGAGAGTGGTACCTGTTCAGCTTGAGGGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGAGCTGGGTACTGGAAGGCCACTGGGAAGGACAAAGAAGTGTACAGTGCTTCAGGTGGAGCCCTACTTGGCATGAAGAAGACCCTTGTTTTCTACAAAGGGAGGGCCCCTCGTGGTGAGAAGACCAAGTGGGTCATGCATGAGTACCGTTTGGATGGTGACTTTTCCATTTCCCATCGTCATTCTCACTCCTGTAAGGAGGAGTGGGTGATATGCAGGATATTCCATAAGTCTGGGGAAAAGAGAACTTCACTGCTTCAAGTGCAAGGACATTTGGATGCTTCTCCATCCCCTACAAAAAGTTCTTTACCTCCTTTACTTGCAAGCCCAACTTCCTTCACATTGGAACTCGAATGCCAATCCCAAAGCTCATCACAGCGAGACTTCCAAGGCCAAGTTCTGATTCCCCACCCAGACTCTCATCTTTTCCCATTGCACACATTCCAACCTTCTTTCCAAATCACTGCTGCTACTAGCACACCAGAAGAAATCACCACCTACACCAGAAACCACACATCTTCAGAAATATTCTTCAAGTCCCAGCTCTCACAACAAAATTGCACCCTGAAGTTCAAGGAACAAACTATTCCAAAACTAAACAAAACAGATGCTGCATTCTGTGAATACCAATTATCAGATGAAGCTAATACCTTGCGCTGGATGGACAAAATAAACCCAAATCCAAGTAATTTCCAGAACTCCTTCCCTCTTGAGATGGATGCTACTGGTTTGATGGCATTCTCAGGAACTGCAAATGCTGAATTTAGGGACATGTCCACTTCAACACCCTTTAACAAAGTAGGGTTGCAGCAGATGCTAGATGCTCCTATTGGAATAGATTCTTGGCCGCAGGCCCAACATGTCTGA 1161 0.4479 MLAMEEVLCELTDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGSFTNVKFAEVDLNRCEPWELPDVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASGGALLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGDFSISHRHSHSCKEEWVICRIFHKSGEKRTSLLQVQGHLDASPSPTKSSLPPLLASPTSFTLELECQSQSSSQRDFQGQVLIPHPDSHLFPLHTFQPSFQITAATSTPEEITTYTRNHTSSEIFFKSQLSQQNCTLKFKEQTIPKLNKTDAAFCEYQLSDEANTLRWMDKINPNPSNFQNSFPLEMDATGLMAFSGTANAEFRDMSTSTPFNKVGLQQMLDAPIGIDSWPQAQHV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02573 386 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Rops10g02573 386 Gene3D NAC domain 31 179 IPR036093 GO:0003677|GO:0006355
Rops10g02573 386 ProSiteProfiles NAC domain profile. 22 175 IPR003441 GO:0003677|GO:0006355
Rops10g02573 386 FunFam NAC domain-containing protein 100-like 31 179 - -
Rops10g02573 386 SUPERFAMILY NAC domain 17 175 IPR036093 GO:0003677|GO:0006355
Rops10g02573 386 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02573 Rops-Chr10 44633486 44636221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02573 1 181 NAC Transcription Factor Family AT1G76420 75.138 4.68e-101 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops10g02573 NAM 1.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02573 - - gmx:100780313 506.138