Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02558 ATGAATTTGGTTTGGATTGTTTTTTCCTGGGTGGTGGTGGTGGTGCTCCCCTATTTGGGAGTGGAGGCTGCAAATGTCTCATCCTCAAGACCCTCTGTTGTGAATATCGGAGCTATCTTCACCTTTGATTCTGTGATTGGCAAAGTGGCAAAAATTGCCATGGAGGAAGCTGTGAAGGATATAAACGCCAATACTAGCATTCTACATGGTACTAACCTTGTTCTTCATATGCAAAATTCCAATTGCAGTGGTTTTGAGGGCATGGTTCAAGCTTTGCGGTTCATGGAGACCGATGTAATTGCTATATTAGGTCCACAATCTTCAGTAGTTGCCCACATAATATCTCATGTTGCAAATGAGCTCAGGGTTCCTCTATTGTCATTTGCTGCTACAGACCCTACACTCTTATCACTGCAGTTCCCATTTTTTGTGAGGACAACACAAAGTGATTTGTACCAGATGACTGCAGTTTCTGAAATCATTGATTATCATGGATGGAAGGAGGTGATTGCCATATATGTAGATGATGATTATGGACGAAATGGTGTGTCTGCGTTAGATGATGCACTAGCTGCCAAGCGCTGTAGAATCTCCTATAAGGCAGGAATTAAATCAGGACCTGAAGTTGACCGGGGTGAAATCACGAACTTGCTTGTGCAGGTGGCACAAATGCAATCTAGAGTCATTGTTCTTCATGTACATTCTAATGCTGGATTTATGGTCTTCAATGTGGCACATTATCTGGGGATGATACAGGAAGGCTACGTCTGGATAGCCACAGATTGGCTCTCCACGGTTATAGATTCTTCTTCTCTCCCTTCAGACGCAACGGATATTCTGCAGGGAGTACTTGTTTTGCGCCAGCATACACCTGATTCAGATAGAAAAAAAGCATTTTTCTCCAGGTGGCACAAGTTAACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTATATGCTTATGATTCTGTTTGGCTTGTTGCACAGGCTATTGATGCGTTTTTCAGTCAGGGTGGGATCGTTTCATGTACCAATTTAACTTATTTACATGATGATAATGGAGGTGGTCTTAACCTTGATGCAATGAGCATTTTTGACAATGGAACGCTTCTGTTGAAGAACATATTGCAGACTGATTTCACTGGATTAACAGGTCCAATGAAATTTGAATCAGACAGATCTCTTGTTCATCCTGCCTATGACATCATTAATGTGGCTGGAACTGGCTTTCGTCGGGTTGGTTATTGGTCCAACTATTCTGGTCTGTCAATTGTACCTCCCGAGACATTGTATGCTAAGCCACCTAATAGATCAAGTGCAAACCAGCACCTTCATAGTGTGATATGGCCTGGAGAAACATTATCCAAGCCCCGTGGATGGGTCTTCCCAAATAATGGAAAACAATTGAGAATCGGTGTGCCTATCCGAGTTAGTTTCCGCGAATTTGTATCACCAGTGCAGGGAACAGATATGTTTAAAGGTTTCTGTATTGATGTATTCACAGCAGCTGTAAACTTGTTACCATATGCTGTTCCATACCACTTTGTGCCATTCGGAGATGGCCGCAAAAATCCAAGCTACACAGAACTTGTCAGCTTAATCACCACTGGTTACTTTGATGGTGCTGTTGGTGACATTGCCATTGTCACAAACCGGACAAGAATTGTAGATTTTACACAGCCATATGCTGCATCTGGACTTGTTGTGGTGGTCCCTTTTAAGAAGATTAATTCTGGCGGTTGGTCTTTCCTGCAGCCATTCACTCCTCTTATGTGGATTGTGACTGCTAGTTTCTTCTTATTCGTTGGTATAGTTGTGTGGATTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCTAAACAACAATTTATAACCATTTTATGGTTTAGCCTGTCAACTCTATTTTTTTCCCACAGAGAGAATACGATGAGTACTCTTGGTCGCATTGTGATACTCATATGGTTGTTTGTGGTTTTGATCATCAATTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATATTCTCCTATCAGTGGAATAGAAAGCTTAAAAGCTAGTGGTGAACCTATAGGATACCAAGTGGGTTCATTTGCAGAACATTACTTGTCTGAAGATCTTGGAATATCCAAATCTAGACTTATTCCCCTTGGATCTCCAGAAGAATATGCTAAGGCACTTCAGCTGGGTCCTAATAAAGGAGGTGTTGCTGCTATTGTTGATGAAAAACATTACATCGAAATCTTCTTATCAACCCAGTGCACATTCAGGATTGTAGGCCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCCCGGGACTCCCCTATGGCTGTGGATTTGTCAACGGCCATTCTACAACTTTCTGAAACTGGTGAGCTGCAGCGGATTCATGATAAGTGGATGACACGAAGCACATGTAGTTTAGATAATGCTGAAATTGATTCAGATCGTCTTCAGCTTAAAAGCTTCTGGGGTCTCTTTCTCATTTTCGGGATGGCTTGCTTTATTGCTCTTATCATATATTTTTTGCAAATTATGGTTCAGTTATGGCATTCTGCTCCTTCTGAACCTGTTCCTCGTGTTAGCTCATTACAAAGATTTCTTTCACTCCTTGACGAGAAGGAAGATCCTTCAAGGAGTGAAAGAAGAAAGAGGAATGGAGAAGAAATATCACCTGAAGACCAACTGGGAAGGCTGCCAAAGAGGATACAGACAGGAACAGCAGCCGAGTTCAAATCAAACAATTAA 2772 0.4217 MNLVWIVFSWVVVVVLPYLGVEAANVSSSRPSVVNIGAIFTFDSVIGKVAKIAMEEAVKDINANTSILHGTNLVLHMQNSNCSGFEGMVQALRFMETDVIAILGPQSSVVAHIISHVANELRVPLLSFAATDPTLLSLQFPFFVRTTQSDLYQMTAVSEIIDYHGWKEVIAIYVDDDYGRNGVSALDDALAAKRCRISYKAGIKSGPEVDRGEITNLLVQVAQMQSRVIVLHVHSNAGFMVFNVAHYLGMIQEGYVWIATDWLSTVIDSSSLPSDATDILQGVLVLRQHTPDSDRKKAFFSRWHKLTGGSLGLHSYGLYAYDSVWLVAQAIDAFFSQGGIVSCTNLTYLHDDNGGGLNLDAMSIFDNGTLLLKNILQTDFTGLTGPMKFESDRSLVHPAYDIINVAGTGFRRVGYWSNYSGLSIVPPETLYAKPPNRSSANQHLHSVIWPGETLSKPRGWVFPNNGKQLRIGVPIRVSFREFVSPVQGTDMFKGFCIDVFTAAVNLLPYAVPYHFVPFGDGRKNPSYTELVSLITTGYFDGAVGDIAIVTNRTRIVDFTQPYAASGLVVVVPFKKINSGGWSFLQPFTPLMWIVTASFFLFVGIVVWILEHRINDEFRGPPKQQFITILWFSLSTLFFSHRENTMSTLGRIVILIWLFVVLIINSSYTASLTSILTVQQLYSPISGIESLKASGEPIGYQVGSFAEHYLSEDLGISKSRLIPLGSPEEYAKALQLGPNKGGVAAIVDEKHYIEIFLSTQCTFRIVGQEFTRSGWGFAFPRDSPMAVDLSTAILQLSETGELQRIHDKWMTRSTCSLDNAEIDSDRLQLKSFWGLFLIFGMACFIALIIYFLQIMVQLWHSAPSEPVPRVSSLQRFLSLLDEKEDPSRSERRKRNGEEISPEDQLGRLPKRIQTGTAAEFKSNN* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02558 923 Gene3D - 149 422 - -
Rops10g02558 923 SUPERFAMILY Periplasmic binding protein-like I 28 460 IPR028082 -
Rops10g02558 923 PRINTS Metabotropic glutamate GPCR signature 153 169 IPR000337 GO:0004930|GO:0007186|GO:0016020
Rops10g02558 923 PRINTS Metabotropic glutamate GPCR signature 134 153 IPR000337 GO:0004930|GO:0007186|GO:0016020
Rops10g02558 923 PRINTS Metabotropic glutamate GPCR signature 102 128 IPR000337 GO:0004930|GO:0007186|GO:0016020
Rops10g02558 923 PRINTS Metabotropic glutamate GPCR signature 169 186 IPR000337 GO:0004930|GO:0007186|GO:0016020
Rops10g02558 923 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
Rops10g02558 923 FunFam Glutamate receptor 464 579 - -
Rops10g02558 923 Pfam Receptor family ligand binding region 52 407 IPR001828 -
Rops10g02558 923 Gene3D - 739 774 - -
Rops10g02558 923 MobiDBLite consensus disorder prediction 880 923 - -
Rops10g02558 923 Pfam Bacterial extracellular solute-binding proteins, family 3 490 810 IPR001638 -
Rops10g02558 923 FunFam Glutamate receptor 580 710 - -
Rops10g02558 923 SUPERFAMILY Periplasmic binding protein-like II 445 811 - -
Rops10g02558 923 Gene3D - 775 808 - -
Rops10g02558 923 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 871 IPR015683 -
Rops10g02558 923 CDD GluR_Plant 467 808 - -
Rops10g02558 923 FunFam Glutamate receptor 706 813 - -
Rops10g02558 923 CDD PBP1_GABAb_receptor_plant 35 426 IPR044440 -
Rops10g02558 923 Gene3D - 464 578 - -
Rops10g02558 923 PIRSF IGluLR_plant 2 922 IPR017103 -
Rops10g02558 923 Gene3D - 579 708 - -
Rops10g02558 923 SMART GluR_14 470 811 IPR001320 GO:0015276|GO:0016020
Rops10g02558 923 FunFam Glutamate receptor 149 301 - -
Rops10g02558 923 MobiDBLite consensus disorder prediction 880 904 - -
Rops10g02558 923 Gene3D - 52 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02558 Rops-Chr10 44492013 44496458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02558 28 894 Ion Channels AT1G42540 65.873 0.0 1234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02558 K05387 - gmx:102661260 1516.52