Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02552 ATGATGGCTGCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCGGATGATAGCTTTCATTTTGAGAGGTTGCACATTGAGCCTATTTATGATGCTTTTGTATGTCCTCTGACGAAGCAAGTTATGCGTGATCCTGTTACTCTAGAAAGTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGACGGAAACTGGTTTGCCCTCTGACTCTGCAAGAATTAAGAAGCACGGAACTGAATCCAAGTATGGCTTTGCGTAACACCATTGAAGAGTGGACTGTCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGTTCATTGAACACAGGGAGTCCAGAAAATGAAACTCTTAAGGCCTTAAAGTATGTCCAGCACATCTGTCAAAGAAATCGGTCAAATAAGCACACTGTCCGCAATGCAGGGCTTATACCAATGATTGTTGACATGCTGAAGAGTAGCAGCCGTAAGATTCGTTGTAGAGCTTTGGAAACCCTTAGAATTGTGGTAGAGGAAGACGATGAGAATAAGGAATTGTTGGCTGAAGGGGACATTGTGCGTACGGTAGTTAAATTCCTTTCACACGAACCTTCTAAAGAAAGAGAGGAGGCTGTCTTCTTGCTTTACGAGCTCTCAAAATCTGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGAGCTATCCTTATGTTAGTTGGAATGACAAGCAGCAATTCAGAAGACCTTTCCACTGTTGAGAAGGCTGACAAAACATTGGAGAATCTGGAGAAGTGTGAGAATAATGTGCGGCAAATGGCTGAAAATGGTAGATTGCAGCCTCTTCTGACCCAGCTTCTTGAAGGTCCACCAGAAACCAAACTCTCCATGGCTGGATGCCTTGGTGATCTGGTTTTGAACAATGACGTTAAAGTCATTGTTGCTAGAACTGCGGGTTCTTCTCTGATCAATATAATGAAAAGTGGTAATGTGCAGTCAAGAGAAGCTGCACTGAAGGCACTAAATCAGATATCATCATGTGAGCCAAGCGCAAAGGTTTTGATAGAGGCCGGAATACTTTCCCCTCTTGTTAATGACCTTTTTGCAGTGGGTCCTAATCAGCTTCCCACACGATTAAAAGAAGTCTCTGCAACAATTCTTGCCAGTGTCGTGATCTCAGGAGAAGACTTTGATTCCATTCCAGTAGGACCTGATCACCAAACTCTGGTCTCAGAGGAGATAGTTCATAATCTACTCCATCTTATAAGCAACACTGGTCCAGCAATCGAGTGCAAACTTCTACAAGTTCTTGTTGGACTTACTAGTTCTCCAACTACAGTGCCGAGTGTTGTGACTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAATTCATTGAGGCACCACAGAAAGATCTCCGTGTAGCTTCCTTAAAGCTTCTTCAGAATTTGTCTCCCCACATGGGTCAGGAACTAGCTGATGCACTGCGTGGCTCAGTTGGACAGCTTGGTAGTCTAGTTAAAGTCATATCAGAAAATACAGGAATCACTGAAGAGCAGGCAGTGGCTGTTGGCCTTTTAGCTGATCTACCTGAGAGGGATTTGGGTCTCACGAGACAGCTACTGGATGAAGGTGCCTTTCTGATGTTCATATCTAGGGTGATTGCCATCAGGCAGGGAGAGATCAGAGGAAGTCGCTTCATGACACCATTTCTTGAAGGGCTTGTGAAGATTGTTGCAAGGGTTACATATGTCTTGGCTGATGAGCCTGATGCTATTGCACTCTGCCGTGATCACAATCTTGCTGCACTGTTTATTGAAATGCTTCAGACTAATGGACTTGATAATGTACAGATGGTTTCTGCTACAGCTTTGGAGAATTTATCACTAGAATCAAAAAGTTTAACCAGATTGCCTGAGATGCCATCACCGGGATTTTGTGCTTCATTCTTTACATGCTTCATCACACAGCCAGTCATTTCTGGATTGTGTAGGATCCACCGAGGGAGGTGTTCTTTAAAAGAAACATTTTGTCTTTATGAAGGACAGGCAGTCCCTAAGTTGGTAGCTCTACTGGACCACACAAATGTGTATGTGGTTGAGGCAGCACTTGCAGCCTTATCTACTATGATAGATGATGGAGTAGATATTGAGCAAGGAGTATTGGTTTTGGTTGAAGCAGAGGGAGTGAAGCCTATACTTGATGTGTTACTTGAGAAACGGTCAGAAACTTTGAGGAGGAGAGCAGTTTGGGCAGCGGAGAGGCTATTGCGAACGGATGAGATAGCCTATGAAATTTCTGGAGATCAAAATGTGAGTACTGCACTTGTGGATGCTTTCCAGCATGGTGACTATAGAACTAGGCAAATTGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCCAACTTCTCTGGAATCTTTCCAAACATGGGATGA 2445 0.4405 MMAASWDGSNDPGSQSDDSFHFERLHIEPIYDAFVCPLTKQVMRDPVTLESGQTFEREAIEKWFKECKESGRKLVCPLTLQELRSTELNPSMALRNTIEEWTVRNEAAQLDMARRSLNTGSPENETLKALKYVQHICQRNRSNKHTVRNAGLIPMIVDMLKSSSRKIRCRALETLRIVVEEDDENKELLAEGDIVRTVVKFLSHEPSKEREEAVFLLYELSKSETLCEKIGSINGAILMLVGMTSSNSEDLSTVEKADKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPETKLSMAGCLGDLVLNNDVKVIVARTAGSSLINIMKSGNVQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPNQLPTRLKEVSATILASVVISGEDFDSIPVGPDHQTLVSEEIVHNLLHLISNTGPAIECKLLQVLVGLTSSPTTVPSVVTAIKSSGATISLVQFIEAPQKDLRVASLKLLQNLSPHMGQELADALRGSVGQLGSLVKVISENTGITEEQAVAVGLLADLPERDLGLTRQLLDEGAFLMFISRVIAIRQGEIRGSRFMTPFLEGLVKIVARVTYVLADEPDAIALCRDHNLAALFIEMLQTNGLDNVQMVSATALENLSLESKSLTRLPEMPSPGFCASFFTCFITQPVISGLCRIHRGRCSLKETFCLYEGQAVPKLVALLDHTNVYVVEAALAALSTMIDDGVDIEQGVLVLVEAEGVKPILDVLLEKRSETLRRRAVWAAERLLRTDEIAYEISGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02552 814 SUPERFAMILY RING/U-box 24 111 - -
Rops10g02552 814 SUPERFAMILY ARM repeat 115 445 IPR016024 -
Rops10g02552 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 115 IPR013083 -
Rops10g02552 814 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 23 810 - -
Rops10g02552 814 Gene3D - 116 316 IPR011989 -
Rops10g02552 814 Pfam U-box domain 32 105 IPR003613 GO:0004842|GO:0016567
Rops10g02552 814 SUPERFAMILY ARM repeat 409 800 IPR016024 -
Rops10g02552 814 Coils Coil 257 277 - -
Rops10g02552 814 Gene3D - 574 804 IPR011989 -
Rops10g02552 814 Gene3D - 317 487 IPR011989 -
Rops10g02552 814 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Rops10g02552 814 CDD RING-Ubox_PUB 31 88 IPR045210 -
Rops10g02552 814 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Rops10g02552 814 SMART arm_5 140 180 IPR000225 GO:0005515
Rops10g02552 814 SMART arm_5 182 222 IPR000225 GO:0005515
Rops10g02552 814 SMART arm_5 673 714 IPR000225 GO:0005515
Rops10g02552 814 SMART arm_5 308 347 IPR000225 GO:0005515
Rops10g02552 814 SMART arm_5 718 760 IPR000225 GO:0005515
Rops10g02552 814 SMART arm_5 348 393 IPR000225 GO:0005515
Rops10g02552 814 SMART arm_5 267 307 IPR000225 GO:0005515
Rops10g02552 814 SMART arm_5 591 632 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02552 Rops-Chr10 44455770 44460898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02552 3 814 U-box Gene Family AT1G76390 64.619 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02552 - - gmx:100815928 1432.16