Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02549 ATGGAGGCAGAGCAACATGATAACCCAAATGGAATTGGAGGCTTGTATGTCAAAGTGATGACTGATGAACAAATGGAATTGCTTAGGCAACAGATATCTGTCTATACCACCATATGTGAACAGCTTGTTGAGATGCACAAAGCCATCACTACTCAACAGGACCTCGCAGGACTGAGGCTAGGTAATTTGTACTGTGATCCATTGATGGCATGTTCTGGACACAAGATAACTGCCAGGCAGCGTTGGACTCCAACGCCTCTTCAGCTTCAAATACTTGAGCGTATTTTTGATGAAGGCAATGGCACTCCAAGCAAACAGAAGATCAAAGAGATAACCATTGATTTGGGGCAACATGGCCAAATATTAGAGACAAATGTTTACAATTGGTTCCAGAATAGAAGAGCTCGTTCCAAGAGGAAGCAAGTGGCTCCCACACCGAATCATGTGGAACCAGAGGCAGAGACAGAAGTTGAGTCTCCAAAAGAGAAAAAGACACCAGCAGAAAGTGTTCAAGTTCAACCCTATGAGAATTCATCGCCTCACAGGGTCAAGGATATGTACATCCAGAGTCCTGACATAGGATTTGATCAATTGATGGGTAAAATAGAAGTTGCAGGTTGCTACAGTTCTTATTTTCTTTGA 642 0.4299 MEAEQHDNPNGIGGLYVKVMTDEQMELLRQQISVYTTICEQLVEMHKAITTQQDLAGLRLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKEITIDLGQHGQILETNVYNWFQNRRARSKRKQVAPTPNHVEPEAETEVESPKEKKTPAESVQVQPYENSSPHRVKDMYIQSPDIGFDQLMGKIEVAGCYSSYFL* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02549 213 Pfam Homeodomain 79 139 IPR001356 GO:0003677
Rops10g02549 213 SMART HOX_1 77 144 IPR001356 GO:0003677
Rops10g02549 213 ProSiteProfiles 'Homeobox' domain profile. 75 140 IPR001356 GO:0003677
Rops10g02549 213 MobiDBLite consensus disorder prediction 137 182 - -
Rops10g02549 213 SUPERFAMILY Homeodomain-like 78 141 IPR009057 -
Rops10g02549 213 CDD homeodomain 79 141 IPR001356 GO:0003677
Rops10g02549 213 MobiDBLite consensus disorder prediction 151 165 - -
Rops10g02549 213 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 196 IPR044559 GO:0003700
Rops10g02549 213 Gene3D - 80 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02549 Rops-Chr10 44390086 44391739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02549 15 211 Wox Gene Family AT4G35550 55.752 3.25e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops10g02549 Homeodomain 9.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02549 - - gmx:100820530 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02549 10 44390086 44391739 Rops10g02549 10 44390086 44391739 ECH