Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops10g02547 | ATGGAAACGTTGTCATCCCACTCCATTATCCTCCAACCCTTTCTCTCTCTTCCGCTCTCTCCCAAACCCTATTCCCCCCTCCAGCTTTCAAACATGAAAGGTGGCAAGTCCAAGACCGAATCTAAGAGAGCTGATGCCAAACTTGCTGTGAATAAGAAAGCTGGCGCCGCTACCAAGGGTGGCAGGAAAACAGGAAAGGGAAAAGCAGCAAAAGACCCTAACAAGCCAAAGAGGCCGCCCAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAACAGTTCAACAAGGAGCATCCTGATAACAAAGCTGTTTCCGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAGAAAGCACCATATGCGGCAAAATCAGAGAAGCGAAAGGTAGACTATGAGAAGAGCATGAGAGCCTATAACAAGAAACAGGCTGAAGGTCCCACTGGCGGAGATGAAGAAGAATCTGAGAAGTCAGTATCTGAGGTGAACGATGAGGATGATGAAGAGGATGCAAGCGGCGAGGAGGATGACGACGAGTAG | 555 | 0.4901 | METLSSHSIILQPFLSLPLSPKPYSPLQLSNMKGGKSKTESKRADAKLAVNKKAGAATKGGRKTGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYAAKSEKRKVDYEKSMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDEEDASGEEDDDE* | 185 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops10g02547 | 184 | MobiDBLite | consensus disorder prediction | 16 | 81 | - | - | |
Rops10g02547 | 184 | Coils | Coil | 127 | 147 | - | - | |
Rops10g02547 | 184 | MobiDBLite | consensus disorder prediction | 95 | 184 | - | - | |
Rops10g02547 | 184 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 4-RELATED | 32 | 179 | IPR031061 | - | |
Rops10g02547 | 184 | Gene3D | High mobility group box domain | 60 | 154 | IPR036910 | - | |
Rops10g02547 | 184 | SUPERFAMILY | HMG-box | 63 | 150 | IPR036910 | - | |
Rops10g02547 | 184 | MobiDBLite | consensus disorder prediction | 125 | 161 | - | - | |
Rops10g02547 | 184 | MobiDBLite | consensus disorder prediction | 162 | 184 | - | - | |
Rops10g02547 | 184 | CDD | HMG-box_AtHMGB1-like | 77 | 137 | - | - | |
Rops10g02547 | 184 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 76 | 145 | IPR009071 | - | |
Rops10g02547 | 184 | SMART | hmgende2 | 75 | 146 | IPR009071 | - | |
Rops10g02547 | 184 | Pfam | HMG (high mobility group) box | 76 | 145 | IPR009071 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops10g02547 | Rops-Chr10 | 44354738 | 44356744 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | HMG | Rops10g02547 | HMG_box | 1.9e-23 | CL0114 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops10g02547 | K25507 | - | gmx:100500173 | 211.075 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops10g02547 | 10 | 44354738 | 44356744 | Rops10g02547 | 10 | 44354738 | 44356744 | ECH |