Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02547 ATGGAAACGTTGTCATCCCACTCCATTATCCTCCAACCCTTTCTCTCTCTTCCGCTCTCTCCCAAACCCTATTCCCCCCTCCAGCTTTCAAACATGAAAGGTGGCAAGTCCAAGACCGAATCTAAGAGAGCTGATGCCAAACTTGCTGTGAATAAGAAAGCTGGCGCCGCTACCAAGGGTGGCAGGAAAACAGGAAAGGGAAAAGCAGCAAAAGACCCTAACAAGCCAAAGAGGCCGCCCAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAACAGTTCAACAAGGAGCATCCTGATAACAAAGCTGTTTCCGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGACCATGTCTGATGCTGAGAAAGCACCATATGCGGCAAAATCAGAGAAGCGAAAGGTAGACTATGAGAAGAGCATGAGAGCCTATAACAAGAAACAGGCTGAAGGTCCCACTGGCGGAGATGAAGAAGAATCTGAGAAGTCAGTATCTGAGGTGAACGATGAGGATGATGAAGAGGATGCAAGCGGCGAGGAGGATGACGACGAGTAG 555 0.4901 METLSSHSIILQPFLSLPLSPKPYSPLQLSNMKGGKSKTESKRADAKLAVNKKAGAATKGGRKTGKGKAAKDPNKPKRPPSAFFVFMEEFRKQFNKEHPDNKAVSAVGKAAGAKWKTMSDAEKAPYAAKSEKRKVDYEKSMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDEEDASGEEDDDE* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02547 184 MobiDBLite consensus disorder prediction 16 81 - -
Rops10g02547 184 Coils Coil 127 147 - -
Rops10g02547 184 MobiDBLite consensus disorder prediction 95 184 - -
Rops10g02547 184 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 32 179 IPR031061 -
Rops10g02547 184 Gene3D High mobility group box domain 60 154 IPR036910 -
Rops10g02547 184 SUPERFAMILY HMG-box 63 150 IPR036910 -
Rops10g02547 184 MobiDBLite consensus disorder prediction 125 161 - -
Rops10g02547 184 MobiDBLite consensus disorder prediction 162 184 - -
Rops10g02547 184 CDD HMG-box_AtHMGB1-like 77 137 - -
Rops10g02547 184 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 76 145 IPR009071 -
Rops10g02547 184 SMART hmgende2 75 146 IPR009071 -
Rops10g02547 184 Pfam HMG (high mobility group) box 76 145 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02547 Rops-Chr10 44354738 44356744 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Rops10g02547 HMG_box 1.9e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02547 K25507 - gmx:100500173 211.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02547 10 44354738 44356744 Rops10g02547 10 44354738 44356744 ECH