Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02544 ATGAGTTGTTTTTCTTGTCTTGTTTCTCGTCGGAAAGATGTTAGAAGGGTCGAAGTTGATAATGGAACTCGATCTGCTACTGCTTCAGGGAATGGGGGAGTGAACGCTGCTGCTACTGAGGGTGAAAGGAAGAAAGAAGGGATGGGGAAGAAGAGTGTGAGCAGTAGCAAAAGCAATACGGCAGCAGCTAGTTTTGGTTTTCGTGAGCTTGCAGCAGCAACAAGGGGTTTTAAGGAAGTGAACTTGATTGGTGAAGGTGGTTTTGGAAGGGTTTACAAGGGTCGTCTTTCAACAGGCGAGGTTGTTGCCATAAAACAATTAAATCATGATGGTCATCAAGGTTTTCAGGAATTTGTAACGGAGGTTCTTATGTTAAGCCTGCTTCATCATTCTAACCTTGTTAAGTTAATTGGATACTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGATCGCTGGAAGATCATCTTTTTGATCTTAACCAAGACAAAGAACCCCTAAGTTGGAGTGCTCGAATGAAGATTGCTGTTGGAGCTGCTCGGGGCCTTGAGTATCTCCATTGCATAGCAGATCCACCTGTTATCTATCGAGACTTGAAATCTGCAAACATCTTATTAGACAACGAATTCAACCCAAAACTGTCAGATTTTGGGCTTGCTAAACTTGGACCTGTTGGAGACAATACTCATGTTTCAACCAGAGTGATGGGTACCTATGGCTACTGTGCGCCAGAGTATGCAATGAGTGGCAAATTAACTCTTAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGGCGTAGGGCAATAGATTCTAGTGGAAGACCAGGAGAGCAAAACTTGGTTTCATGGTCTCGCCCATTTTTCAGTGACCGGAGAAAGTTTGTACATATGGTTGACCCTCTTTTGCAAGGACACTTCCCCTTGCGCTGTTTGCATCAGGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCAAAACTCATCATTGCAACCACATTCAGAAATGGACAGAAATTAATTTTCACAGGCTTCAAACTTTGGCCAGGCCCCTATGACATGTTCTTGTCATTTCAACCAAATGAGGAAGGTGGGGGGAAGAGGGTTTTCACTTGTTGA 1152 0.4349 MSCFSCLVSRRKDVRRVEVDNGTRSATASGNGGVNAAATEGERKKEGMGKKSVSSSKSNTAAASFGFRELAAATRGFKEVNLIGEGGFGRVYKGRLSTGEVVAIKQLNHDGHQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLNQDKEPLSWSARMKIAVGAARGLEYLHCIADPPVIYRDLKSANILLDNEFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDSSGRPGEQNLVSWSRPFFSDRRKFVHMVDPLLQGHFPLRCLHQAIAITAMCLQEQPKLIIATTFRNGQKLIFTGFKLWPGPYDMFLSFQPNEEGGGKRVFTC* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02544 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Rops10g02544 383 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Rops10g02544 383 SUPERFAMILY Protein kinase-like (PK-like) 56 338 IPR011009 -
Rops10g02544 383 Gene3D Phosphorylase Kinase; domain 1 36 152 - -
Rops10g02544 383 ProSiteProfiles Protein kinase domain profile. 77 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02544 383 PANTHER OS07G0668900 PROTEIN 26 338 - -
Rops10g02544 383 Gene3D Transferase(Phosphotransferase) domain 1 153 342 - -
Rops10g02544 383 MobiDBLite consensus disorder prediction 20 56 - -
Rops10g02544 383 FunFam Serine/threonine-protein kinase PBS1 153 342 - -
Rops10g02544 383 SMART serkin_6 77 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02544 383 Pfam Protein kinase domain 77 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02544 383 FunFam probable serine/threonine-protein kinase RLCKVII 49 152 - -
Rops10g02544 383 CDD STKc_IRAK 83 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02544 Rops-Chr10 44312045 44315730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02544 1 336 Glycoside Hydrolase AT3G07070 60.234 1.33e-143 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Rops10g02544 Pkinase 5.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02544 - - gmx:100796595 559.681