Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02543 ATGGGAAACTGTTTCAGAAAGCCAGGTGATGATAAAAAGATTGAGATTAAGACTACCGCCACCAATAAACCACCACACAAATCTGCTTCAGAAAGAAGTGATGGGGTCAAATTGGTTGGAGTTGAGAAGGAAGAAAGAGGGGTTGGGCCACACAACAGTGTGAGCATGGTCAATCCAACACAGCCACCTAGTGGAAAGATCGTTACGCCGAACCTTAAAATGTTCACATTGGATGAGTTGAAAAGTGCCACAAGAAACTTCAGACCAGACACGGTCCTAGGTGAGGGTGGTTTTGGGCGTGTTTTCAAAGGTTGGATCGACCCTAACACCTACAAGCCTTCCAGAGTTGGCGTTGGAATCCCCGTTGCTGTCAAGAAGTCTAACCCTGATAGTCTCCAAGGTCTTAAAGAATGGCAGAGTGAAGTGAAATTTTTGGGGAAATTCTCTCATCCAAACCTGGTTAAACTACTTGGCTATTGTTGGGATGAAAATCAATTCCTGCTCGTGTATGAATACATGCAAAAGGGCAGCTTGGAAAGCCACCTATTCAGAAGAGCCCCAGAACCACTTTCGTGGGATACAAGGCTCAAGATAGCCATAGGAGCTGCCAGAGGTTTGGCTTTCTTGCATACGTCAGAAGATTCTGTCATCTATAGAGACTTCAAGTCCTCAAACATTTTGCTTGATGGGGATTTCACTGCAAAGCTCTCAGACTTTGGGTTGGCAAAGTTTGGCCCCGACAACGGTAGATCCCACATAACCACGCGGGTTATGGGCACTCATGGTTACGCAGCCCCGGAGTACATGGCCACAGGTCATCTCTATGTGAAAAGCGACGTATATGGGTTTGGTGTTGTTCTGCTAGAAATGTTAACAGGCTTAATAGCGGTGGACACAACTCGGCCCATGGCCCAGCTTAATTTGGTGGATTTCACTAAGCCATCTCTAAGTGACAAAAAGAAACTAAAAAGGATAATGGATCAAAAGATGGACCAACGGTACTCAATAACAGCTGCACTTCAAGTAGCCCAACTTATTCAGAAATGTTTAGAATCTGACCCAAAAAATCGTCCCTCTATGGAGGAGGTTTTGAGAATCTTAGAGAAGGCTCAAAGCATAAAATATAAACCCAAAGAGAAGAAAGCCCACAAAGGGAATCAAACAAATAAGCAACCAGAGGAGCATCCCACACATAACCAACGTCGGTCTCCAAATCATCAGAACAACAATGGTCACTCGAAATCACGAACTCATACCCCTCGATAG 1266 0.4479 MGNCFRKPGDDKKIEIKTTATNKPPHKSASERSDGVKLVGVEKEERGVGPHNSVSMVNPTQPPSGKIVTPNLKMFTLDELKSATRNFRPDTVLGEGGFGRVFKGWIDPNTYKPSRVGVGIPVAVKKSNPDSLQGLKEWQSEVKFLGKFSHPNLVKLLGYCWDENQFLLVYEYMQKGSLESHLFRRAPEPLSWDTRLKIAIGAARGLAFLHTSEDSVIYRDFKSSNILLDGDFTAKLSDFGLAKFGPDNGRSHITTRVMGTHGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIAVDTTRPMAQLNLVDFTKPSLSDKKKLKRIMDQKMDQRYSITAALQVAQLIQKCLESDPKNRPSMEEVLRILEKAQSIKYKPKEKKAHKGNQTNKQPEEHPTHNQRRSPNHQNNNGHSKSRTHTPR* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02543 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Rops10g02543 421 MobiDBLite consensus disorder prediction 1 20 - -
Rops10g02543 421 SUPERFAMILY Protein kinase-like (PK-like) 72 377 IPR011009 -
Rops10g02543 421 MobiDBLite consensus disorder prediction 1 68 - -
Rops10g02543 421 MobiDBLite consensus disorder prediction 382 401 - -
Rops10g02543 421 Gene3D Phosphorylase Kinase; domain 1 71 172 - -
Rops10g02543 421 PANTHER OS01G0588500 PROTEIN-RELATED 33 371 - -
Rops10g02543 421 MobiDBLite consensus disorder prediction 53 67 - -
Rops10g02543 421 MobiDBLite consensus disorder prediction 27 49 - -
Rops10g02543 421 MobiDBLite consensus disorder prediction 402 421 - -
Rops10g02543 421 ProSiteProfiles Protein kinase domain profile. 87 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops10g02543 421 CDD STKc_IRAK 93 369 - -
Rops10g02543 421 Pfam Protein tyrosine and serine/threonine kinase 91 366 IPR001245 GO:0004672|GO:0006468
Rops10g02543 421 ProSitePatterns Protein kinases ATP-binding region signature. 93 126 IPR017441 GO:0005524
Rops10g02543 421 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 173 381 - -
Rops10g02543 421 MobiDBLite consensus disorder prediction 371 421 - -
Rops10g02543 421 FunFam Serine/threonine-protein kinase BIK1 55 172 - -
Rops10g02543 421 Gene3D Transferase(Phosphotransferase) domain 1 173 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02543 Rops-Chr10 44295118 44299071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02543 66 367 Glycoside Hydrolase AT3G07070 47.557 6.76e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops10g02543 PK_Tyr_Ser-Thr 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02543 - - aprc:113865973 640.188