Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02540 ATGGGAGATGGTGTTGTGACATCATCTGGTACCATGATGGAAGCTCCACTTGATGGAACCTCAATGGATTTTGACTACATGAGTGAACTTCTCTTAGATGGTTGCTGGTTGGAAGCTTCAGCTGATGGATCTGACTTCTTGCTTCAAAGTCCTTCATTTTCCAACACCCTGTTTGACCCTTCTTTCTCTTGGCCTGCCTTAGAGACCAACGAGACACCCCATGATGGGGATCGACATGAATCACAAGAAGCTCCTCTTGGCACCCAACAAGTAAGCCAGAACATAGTTAATGTTACTGGTAGTTGTAATCAGCAGTATCAGTCTGAAACTCACTCAGTTGAAGGTACATCTGAAGTTGTCAGAAGGTGGTGGATTGCACCTACGCCTAATCCAGGACCTGGATCTTCCATAATGGAGAAACTGATAAGGGCACTCAAGTGGATCAAAGTTTTCAATAGGGACAAAGATATGCTTATACAAATATGGGTGCCAGTTAATAATAAAGGGTGCAGGCCAATTTTGACAGCTAAGGATCTTCCCTTTTCACTTGAAACCAGGTCTCCAAACCTTGCAAAGTATAGAGAAATTTCTGTGAGATATCTGTTTTCAGCAGAGGAGGAGTCAAAGGTGCCGGGATTGCCTGGTAGAGTTTTTCGAGATAAGGTTCCTGAGTGGACTCCTGATGTTAGATTCTTTAGGAGTGATGAGTATCCACGAGTTGAACATGCTCAAGTGTATGATATACGTGGAACATTAGCAGTTCCAATCTTTGAACAAGGTGGCAAGACTTGCTTGGGTGTTATTGAGGTTGTGATGACTACTCAGCAGATCAACTATGGCCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGTTGTTGATCTTAGAAGCTCAAGACATTCAAGTATTCAAAATGTGAAGGCATGTGACAAGTCCTATGAAGCTGTACTACCTGAGATTCAAGAGGTGTTGAGATCTGCATGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTCCCATGCATTCAACAAGGCAAAGACGGGTGTCGGCACTCTGAAGATAATTATTTACAATGTATATCTCCTGTGGAGCATGCTTGCTATGTTGGTGATCCCTCTATCAGGTCTTTTCATGAGGCTTGCATTGAGCATCACTTGTTAAAAGGTCTAGGTGTTGCTGGGGGAGCTTTTATGACAAATCAACCATGCTTCTCAACTGACATAACTTCCTTAAGCAAGACAGACTATCCACTGTCTCATCATGCAAGATTGTTTGGATTGCGAGCTGCAGTTGCCATACGCCTTCGAAGCATCTATGGTAGTAGAGATGACTATGTTCTAGAGTTCTTCTTGCCTTCAAAATGCACTGACAGTGAAGAACAGAGAAAGATGCTTACATCATTGTCCATGATCATACAAAGGGTTTGCCACAGCTTGCGGGTTATAACAGATAAGGAATTGGAGGAAGCTAACTTATCAGTTGATGAAGTGATAGGCCTTTCAGATAGTGGATTTGCTGGGAGTGCAATTTGGTCAGAACTCCAACATGGAAGGATGGTTGCCTCATTGGGCACTGAAGAAAAATCAAGTGAAACAATGGGTAGAAAATTCTCTGATCTAAGGCAGCAACAAGAAAATCTTATTTTAAAAGGAAATCTTGACTGTGGTAGGGAGGGTTCTACTTTTGTTGAGGGTAACTTACCAAGTGTGGGAATAAGTAAAATGGGAGAGAAAAGACGGACCAAAGCAGAGAAAACAATCACTCTGCAAGTTCTTAGGCAATATTTTGCTGGAAGCCTGAAAGATGCTGCGAAGAATATTGGTGTTTGTACCACAACATTGAAAAGGATCTGCCGGCAACATGGGATAAAGCGATGGCCTTCAAGAAAGATCAAAAAAGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTTCAAGCTGCTTCTGGTGCATTTCAAATCGATTCCTTCTATTCAAAATTCTCGGATCTAGCTTCTCCAAATATATCAGGAACCGGCCTTGTCTCAACTCTGAATCAAAGTGACAATCCAAACTCATTAACCACACAGCCAGATCCTGGCTCTTTGAGCCCAGAAGGTGCATCAAAATCACCCTCTTCTTCATGCAGTCAAAGTTCCTTTTCAAGCCAATCCTGCTCCAGCATGTCAGAACAACAGCATCACACAAGTAATATTGCTGGTAACAAAGATCCTATGGTTGGTGAAGATTCTGTTGATGTTGTGTTGAAGAGGATAAGAAGTGAAGCAGAACTTAAAAGCCTGAGTAAAAATAGAACAAAGCTCTTGCCAAGATCCCAAAGCCAGGAAATACTTGGTGAACACCCTAAAACTAAGTATCACATGTCCTTATTAAAAAACAGTCGCCAAGCACCTCAAAAGGAGGATACATACAGAGTAAAAGTTACTTATGGAGATGAGAAAACCCGGTTTCGGATGCCAAAGAATTGGGGTCATGAAGATCTTTGGCAGGAAATTGCTGGGAGATTTAACATTAGTGACATGAACAAATTTGATATCAAATATTTGGATGATGATAGTGAGTGGGTATTACTTACCTGTGATGCTGATTTGGAGGAATGCATTGATGTTTGTCAGTCTTCTGAGAGTAGTACAATCAAACTTTGTCTAAAAGCTTCAAGTCATTGCATGAGAAGTTCTTTAGAATGTAGATAG 2706 0.4154 MGDGVVTSSGTMMEAPLDGTSMDFDYMSELLLDGCWLEASADGSDFLLQSPSFSNTLFDPSFSWPALETNETPHDGDRHESQEAPLGTQQVSQNIVNVTGSCNQQYQSETHSVEGTSEVVRRWWIAPTPNPGPGSSIMEKLIRALKWIKVFNRDKDMLIQIWVPVNNKGCRPILTAKDLPFSLETRSPNLAKYREISVRYLFSAEEESKVPGLPGRVFRDKVPEWTPDVRFFRSDEYPRVEHAQVYDIRGTLAVPIFEQGGKTCLGVIEVVMTTQQINYGPELESVCKALEVVDLRSSRHSSIQNVKACDKSYEAVLPEIQEVLRSACEMHKLPLAQTWVPCIQQGKDGCRHSEDNYLQCISPVEHACYVGDPSIRSFHEACIEHHLLKGLGVAGGAFMTNQPCFSTDITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYGSRDDYVLEFFLPSKCTDSEEQRKMLTSLSMIIQRVCHSLRVITDKELEEANLSVDEVIGLSDSGFAGSAIWSELQHGRMVASLGTEEKSSETMGRKFSDLRQQQENLILKGNLDCGREGSTFVEGNLPSVGISKMGEKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQAASGAFQIDSFYSKFSDLASPNISGTGLVSTLNQSDNPNSLTTQPDPGSLSPEGASKSPSSSCSQSSFSSQSCSSMSEQQHHTSNIAGNKDPMVGEDSVDVVLKRIRSEAELKSLSKNRTKLLPRSQSQEILGEHPKTKYHMSLLKNSRQAPQKEDTYRVKVTYGDEKTRFRMPKNWGHEDLWQEIAGRFNISDMNKFDIKYLDDDSEWVLLTCDADLEECIDVCQSSESSTIKLCLKASSHCMRSSLECR* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02540 901 ProSiteProfiles RWP-RK domain profile. 574 655 IPR003035 -
Rops10g02540 901 Pfam PB1 domain 807 888 IPR000270 GO:0005515
Rops10g02540 901 Gene3D - 803 889 - -
Rops10g02540 901 SUPERFAMILY CAD & PB1 domains 797 891 - -
Rops10g02540 901 MobiDBLite consensus disorder prediction 679 737 - -
Rops10g02540 901 SMART PB1_new 807 890 IPR000270 GO:0005515
Rops10g02540 901 Pfam RWP-RK domain 587 635 IPR003035 -
Rops10g02540 901 MobiDBLite consensus disorder prediction 679 744 - -
Rops10g02540 901 PANTHER PROTEIN NLP8 83 896 IPR045012 GO:0003700
Rops10g02540 901 CDD PB1_NLP 809 889 IPR034891 -
Rops10g02540 901 ProSiteProfiles PB1 domain profile. 807 890 IPR000270 GO:0005515
Rops10g02540 901 MobiDBLite consensus disorder prediction 64 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02540 Rops-Chr10 44243547 44248071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02540 22 892 NLP Transcription Factor Family AT1G20640 48.824 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Rops10g02540 PB1 2.2e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02540 - - gmx:100785135 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02540 10 44243547 44248071 Rops10g02540 10 44243547 44248071 ECH