Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02515 ATGTCGAGAAGCAAAGGCTGTGATGGTGGTGAAGAGGGTGAAGAGGGTAAGCACTACCCTCCCCCTCTTGCCTCTCATGACGACGTCGTTAATGACCCCTCTCTCTTCTGGGACACTCTCAGGCGCTTTCACTTTCTCATGGGTACCAAATTCATGATTCCTGTGATTGGAGGGAAGGAGCTGGACTTGCACGTTCTTTACGTGGAGGTTACGAGGAGAAGCGGTTATGAGAAGGTGGTTGCAGAGAAGAAATGGAGGGAAGTAGGGAGTGTATTCAGGTTCTCAGCTACCACCACAAGTGCTTCTTTTGTACTGAGGAAACATTACTTCAATCTTCTCTACCATTATGAACAAGTTCACTTCTTTAAAGTTCGGGGTCCTCTCTACACTCCATCACCAGATGCATTTTCTGGTAGCAGCCCGTCGTGGAGACCTGACTTAGCTATTGTTGAATATTCACCTCCTGAACCCCATGCTGAAGTGCCTGTAGATACCACATGCCTTATTGGAAATGGAACTATAGAAGGAAAATTTGATTGTGGCTATTTAGTGTCTGTGAAATTGGGTTCGGAGGTTCTTAGAGGGGTGCTTTACCATCCAGAACAATCGGTTCCTCCTCCTTCGGTTCCACAACATGTCAGTACCATCGTACCTTTCAATGGCAAACATCGCCATTCTGGTCGGAGAAGGAAAAACAAAAGAAGGTGGGACCCCAATTATCCAAAGCCAAATAGGAGTGGCTATAACTTCTTCTTTGCTGAAAAGCATTATAAGCTCAAAGAGCTCTACCCAAGCAGAGAAAGGGAGTTCACCAAAATGATTGGCCAGTCCTGGAATAGTCTTAGCCCTGAAGAAAGAAAGGTTTACCAGAACATTGGCTTAAGGGACAAAGAAAGGTACAAAAGAGAATTGACCGAGTACAAGGAAAAAATGAAGCTTAACCAGACTGAAGTTGGACGTCCATAA 966 0.4524 MSRSKGCDGGEEGEEGKHYPPPLASHDDVVNDPSLFWDTLRRFHFLMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGSVFRFSATTTSASFVLRKHYFNLLYHYEQVHFFKVRGPLYTPSPDAFSGSSPSWRPDLAIVEYSPPEPHAEVPVDTTCLIGNGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQSVPPPSVPQHVSTIVPFNGKHRHSGRRRKNKRRWDPNYPKPNRSGYNFFFAEKHYKLKELYPSREREFTKMIGQSWNSLSPEERKVYQNIGLRDKERYKRELTEYKEKMKLNQTEVGRP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02515 321 CDD HMG-box_AtHMGB9-like 241 307 - -
Rops10g02515 321 SMART ARID_2 27 117 - -
Rops10g02515 321 ProSiteProfiles ARID domain profile. 30 121 IPR001606 GO:0003677
Rops10g02515 321 MobiDBLite consensus disorder prediction 219 241 - -
Rops10g02515 321 MobiDBLite consensus disorder prediction 1 22 - -
Rops10g02515 321 MobiDBLite consensus disorder prediction 222 236 - -
Rops10g02515 321 SMART bright_3 31 122 IPR001606 GO:0003677
Rops10g02515 321 Gene3D High mobility group box domain 225 319 IPR036910 -
Rops10g02515 321 CDD ARID_HMGB9-like 32 117 IPR045303 GO:0003677
Rops10g02515 321 Gene3D - 24 125 IPR036431 GO:0003677
Rops10g02515 321 SUPERFAMILY ARID-like 26 128 IPR036431 GO:0003677
Rops10g02515 321 SUPERFAMILY HMG-box 238 311 IPR036910 -
Rops10g02515 321 SMART hmgende2 240 309 IPR009071 -
Rops10g02515 321 Pfam ARID/BRIGHT DNA binding domain 35 117 IPR001606 GO:0003677
Rops10g02515 321 Coils Coil 297 317 - -
Rops10g02515 321 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 241 308 IPR009071 -
Rops10g02515 321 Pfam HMG (high mobility group) box 241 308 IPR009071 -
Rops10g02515 321 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 316 - -
Rops10g02515 321 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02515 Rops-Chr10 43888351 43901956 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02515 17 313 ARID Transcription Factor Family AT1G76110 66.013 6.06e-131 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Rops10g02515 ARID 1.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02515 - - gmx:100784746 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02515 10 43888351 43901956 Rops10g02515 10 43888351 43901956 ECH