Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02494 ATGGCTCAACCCGCATGGGAAAAGATTGGTATTTACAGAGGAGGGATCGTGCCCGTGTTGTTCCAAAGGGTTCCATGCAAGAAGCACGGAGGGGTCAGGTTCACTGTGTATAGGAGAGACTATTTTGAACTTGTATTGATCAGCAATGTGGGAGGGGCTGGATCTATGCAATCTGTGTCCATTAAAGGCTCGAAAACTGGATGGATGGCTATGTCAAGAAACTGGGGAGCTAATTGGCAATCCAATGCATATTTGAATGGTCAATCTTTATCTTTTAGGGTCACTACCACTGATGGAGTAACTAGACTTTCCAAGATGTTGTCCCTTCAAATTGGGCATTTGGTTAGCAGGGTCCAGTTCTAA 363 0.449 MAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTVYRRDYFELVLISNVGGAGSMQSVSIKGSKTGWMAMSRNWGANWQSNAYLNGQSLSFRVTTTDGVTRLSKMLSLQIGHLVSRVQF* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02494 120 SUPERFAMILY PHL pollen allergen 28 103 IPR036749 -
Rops10g02494 120 PRINTS Expansin/Lol pI family signature 14 30 IPR007118 GO:0005576
Rops10g02494 120 PRINTS Expansin/Lol pI family signature 68 82 IPR007118 GO:0005576
Rops10g02494 120 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 41 101 IPR007117 -
Rops10g02494 120 PANTHER EXPANSIN-A15 1 104 IPR002963 GO:0009664
Rops10g02494 120 Pfam Expansin C-terminal domain 32 104 IPR007117 -
Rops10g02494 120 PRINTS Expansin signature 6 19 IPR002963 GO:0009664
Rops10g02494 120 PRINTS Expansin signature 30 42 IPR002963 GO:0009664
Rops10g02494 120 PRINTS Expansin signature 77 98 IPR002963 GO:0009664
Rops10g02494 120 PRINTS Expansin signature 42 63 IPR002963 GO:0009664
Rops10g02494 120 Gene3D - 31 110 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02494 Rops-Chr10 43517260 43517708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops10g02494 1 103 Expansin Gene Family AT1G20190 81.553 7.36e-59 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02494 - - tcc:18591604 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02494 10 43517260 43517708 Rops10g02494 10 43517260 43517708 ECH
Rops9g02575 9 48200644 48202460 Rops10g02494 10 43517260 43517708 PCT